Documentation for workflow and scripts

From WormBaseWiki
Revision as of 21:57, 12 June 2015 by Jdone (talk | contribs) (The instructions for running the scripts that automate concise descriptions of genes for Wormbase.)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to navigationJump to search

Make sure that the files in the docroot or /var/www directory in which the data are stored report the current production release, release of sources and the list of Wormbase supported species:

 production_release.txt will hold the production release for the output of the concise descriptions.
 release.txt            holds the release information for the sources.
 species.txt            lists the species abbreviation, project name, full name and gene prefix for each species:
                        c_briggsae	PRJNA10731	Caenorhabditis briggsae	Cbr

The first step is to go to the directory that includes the location of the scripts.

Then create the directories needed by the scripts for a production release:

$ ./create_release_directories_parallel.pl WS250