DictyBase
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Revision as of 17:22, 19 April 2011 by Vanaukenk (talk | contribs) (→CCC for dicty Timeline - 2011)
CCC for dicty Timeline - 2011
1. Implement Textpresso 2.5 for dictyBase - Arun DONE 1a. Automating dicty literature upload - Arun, Petra, Sidd
2. Clone CCC curation form for dictyBase - Juancarlos
3. Test searches - from web site or by script? - Arun, Kimberly, Juancarlos
4. dicty curation - Petra, Kimberly
5. Output files - Petra, Kimberly, Sidd, Juancarlos
Previous Work - 2009/2010
Proposed Curation Pipeline
- New papers are processed with an SVM developed for dicty cellular component curation
- Sentences from resulting positives (confidence level TBD) are subject to Textpresso category searches
- Positive sentences are presented to curators along with suggested GO terms and GO IDs
11/11/2009 Pascale, Petra finished uploading of dicty papers for Cellular Component SVM.
11/20/2009 Status of SVM?
11/20/2009 Categories on dicty site - two groups of CCC categories, remove Curator Specific categories?
04/07/2010 Awaiting analysis of dicty SVM - high confidence positives and checkFN file.
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