Difference between revisions of "Developer documentation"
From WormBaseWiki
Jump to navigationJump to search| Line 3: | Line 3: | ||
= Getting started = | = Getting started = | ||
| − | |||
*[http://www.wormbase.org/forums/index.php?board=326.0 WormBase Wiki: Developer Forum] | *[http://www.wormbase.org/forums/index.php?board=326.0 WormBase Wiki: Developer Forum] | ||
*[http://spreadsheets.google.com/ccc?key=pHvlNLMCZIv1KBoy8ZhbZXA&hl=en Migration matrix (GoogleDoc)] | *[http://spreadsheets.google.com/ccc?key=pHvlNLMCZIv1KBoy8ZhbZXA&hl=en Migration matrix (GoogleDoc)] | ||
Revision as of 21:31, 16 April 2009
This page contains information pertinent to developers of WormBase.
Contents
Getting started
- WormBase Wiki: Developer Forum
- Migration matrix (GoogleDoc)
- HOWTO migrate a CGI - quick overview of how to migrate an existing CGI into a Model, Controller, and View. Sparse
Source Code and Project Management
- Getting the code -- Getting the code from the WormBase Mercurial repository
- Trac Feature Tracker / Subversion repository
Software platform
- Application overview - A quick tour through the software platform
- Installing the Web Application - Here's how to install the WormBase web application -- including Catalyst -- on your system
- Common Model elements - reference list of common model elements handled generically
- Coding standards
- WormBase Development Environment - Building, Configuring, and Administering the WormBase development server
- Deployment - How to deploy the web app for production use
Hardware platform
- Logical structure
- Physical structure
- MySQL database replication - Mirroring mysql databases across production nodes
- Performance optimization - Memory, Disk, and Network I/O troubleshooting
- Hardware catalog - A complete accounting of WormBase compute resources
- Base node configuration - CentOS5 - Configuring a WormBase node from scratch (CentOS 5)
Administration
- Updating The Development Server - Updating the development server with a new release of the database
- Monitoring services and servers
- Crises Recovery Plan - Everything breaks. Here's how to fix it.
- Building WormMart - How to convert a WormBase AceDB database into WormMart
- Trac installation notes
Load balancing and Failover
- Building Squid - How to build and install Squid
- Configuring Squid - basic squid configuration at WormBase
- Log file management and analysis - rotating and analyzing logs
Developer Meetings
Presentations
CSHL conference call slides
Part 1: Introduction (key, pdf)-- Catalyst, the reimplementation strategy, and roadmap
Part 2: On Configuration (key,pdf) -- Configuration basics (and freebies)
