Difference between revisions of "Detailed Documentation of Form and Scripts"
From WormBaseWiki
Jump to navigationJump to searchLine 28: | Line 28: | ||
creates these two tables: | creates these two tables: | ||
ccc_sentenceclassification | ccc_sentenceclassification | ||
− | ccc_mod | + | ccc_mod text, |
− | ccc_file | + | ccc_file text, |
− | ccc_paper | + | ccc_paper text, |
− | ccc_section | + | ccc_section text, |
− | ccc_sentnum | + | ccc_sentnum text, |
− | ccc_sentenceclassification | + | ccc_sentenceclassification text, |
− | ccc_comment | + | ccc_comment text, |
− | ccc_curator | + | ccc_curator text, |
− | ccc_timestamp | + | ccc_timestamp text, |
ccc_sentenceannotation | ccc_sentenceannotation |
Revision as of 19:38, 16 August 2013
Currently, on mangolassi the ccc.cgi and other scripts and files are here:
azurebrd/public_html/cgi-bin/forms/ccc
- accession
- This is a file that maps WB WBPaper IDs to PMIDs.
- For WB, this file is generated each time the search is performed.
- ccc_celegans_2013only
- I believe these are old test files that can be deleted.
- ccc.cgi
- This is the code for the curation form.
- ccc.cgi Documentation
- ccc.js
- This is the ccc form javascript code.
- If we want to change the number of characters needed to begin autocomplete, we can do that here.
- c_elegans.WS234.xrefs.txt and c_elegans.WS236.xrefs.txt
- These are files generated with each WB build that were used to create the WB gpi file.
- generate_gpi.pl
- This is the script that will be used to manually generate a new gpi file for WB.
- jquery
- This directory contains...
- notes
- This file contains a short bit about mapping WBGene IDs to UniProtKB accessions for the gpi file.
- scripts
- This directory contains:
- accession file - This is a mapping file that contains the mappings between WBPaper IDs and PMIDs as well as TAIR doc IDs and PMIDs. Note that we need PMIDs to send annotations to Protein2GO.
- create_ccc_pgcuration.pl - This perl script creates two postgres tables:
- This directory contains:
creates these two tables:
ccc_sentenceclassification ccc_mod text, ccc_file text, ccc_paper text, ccc_section text, ccc_sentnum text, ccc_sentenceclassification text, ccc_comment text, ccc_curator text, ccc_timestamp text,
ccc_sentenceannotation ccc_mod text, ccc_file text, ccc_paper text, ccc_section text, ccc_sentnum text, ccc_geneproduct text, ccc_component text, ccc_goterm text, ccc_evidencecode text, ccc_with text, ccc_alreadycurated text, ccc_comment text, ccc_valid text, ccc_ptgoid text, ccc_curator text, ccc_timestamp
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