Difference between revisions of "Design Specs: Evidence Handling"
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WRAPPER $field_block title=String.capital; | WRAPPER $field_block title=String.capital; | ||
FOREACH obj IN fields.structured_description.data.$sd; | FOREACH obj IN fields.structured_description.data.$sd; | ||
− | <div class="text-width" style="margin:0.5em"> | + | /<div class="text-width" style="margin:0.5em"/> |
markup(obj.text); | markup(obj.text); | ||
evidence(obj.evidence,sd); | evidence(obj.evidence,sd); | ||
− | </div> | + | /</div/> |
END; | END; | ||
END; | END; |
Revision as of 20:56, 3 January 2012
Contents
API
the base function
by calling the _get_evidence($node,$type) subroutine in lib/API/Object.pm
argument $type is optional. If specified, only this type of evidence is retrieved.
returns a hash reference containing all the types of evidences to the right of the node
code snippet: sub _get_evidence { ... ... $data{$type}{$evidence}{id} = "$evidence"; $data{$type}{$evidence}{label} = "$label"; $data{$type}{$evidence}{class} = lc($class) if(defined $class); ... ... return %data ? \%data :undef; }
use it in each class module
e.g. in lib/API/Object/Gene.pm
sub gene_ontology { ... push @{ $data{$facet} }, { method => $1, evidence_code => {text=>"$evidence_code",evidence=>$self->_get_evidence($evidence_code)}, term => $self->_pack_obj($go_term), }; ... }
Template
generic evidence macro
in root/templates/shared/page_elements.tt2 we defined the evidence macro
[% MACRO evidence(data, id) BLOCK %]
data is the returned hash reference and id sets the div id number/label in case there are multiple evidence display on same page
e.g. root/templates/classes/gene/overview.tt2
FOREACH sd IN fields.structured_description.data.keys; WRAPPER $field_block title=String.capital; FOREACH obj IN fields.structured_description.data.$sd;
/
markup(obj.text); evidence(obj.evidence,sd);
/
END; END; END;
DataTable=
in the jquery_data_table_html macro we also added evidence handling
if a cell in the table contains evidence information, it will be shown up automatically.