Difference between revisions of "Design Specs: Evidence Handling"

From WormBaseWiki
Jump to navigationJump to search
Line 23: Line 23:
 
==use it in each class module==
 
==use it in each class module==
  
  e.g. in lib/API/Object/Gene.pm
+
e.g. in lib/API/Object/Gene.pm
 +
 
 
   sub gene_ontology {
 
   sub gene_ontology {
 
   ...
 
   ...

Revision as of 20:44, 3 January 2012

API

the base function

by calling the _get_evidence($node,$type) subroutine in lib/API/Object.pm

argument $type is optional. If specified, only this type of evidence is retrieved.

returns a hash reference containing all the types of evidences to the right of the node

 code snippet: 
 sub _get_evidence {
 ...
 ...
 $data{$type}{$evidence}{id} = "$evidence"; 
 $data{$type}{$evidence}{label} = "$label"; 
 $data{$type}{$evidence}{class} = lc($class) if(defined $class);
 ...
 ...
 return %data ? \%data :undef;
 }

use it in each class module

e.g. in lib/API/Object/Gene.pm

 sub gene_ontology {
  ...
  push @{ $data{$facet} }, {
               method        => $1,
               evidence_code => {text=>"$evidence_code",evidence=>$self->_get_evidence($evidence_code)},
               term          => $self->_pack_obj($go_term),
           };
  ...
 }

Template