Design Specs: Database Connectivity

Objectives

Part of the WormBase::API. Needs to be able to connect to multiple databases (multiple instances of the same database in some cases). Should be fault tolerant if a server or database crashes.

Resources

The current connectivity code is part of the API. The API, in turn, is inside of the lib directory of the WormBase mercurial repository:

http://bitbucket.org/tharris/wormbase/src/tip/lib/WormBase/API/Service/

Currently, each database is a "Service". When the API is instantiated, connections are made to each required service. Database handles are cached. When a database handle is needed, the service first checks to see if it is live, if not it refreshes the connection. This would probably be the ideal location to implement failover -- check the current connection, if dead, try a different database server.

>Failover can be implemented through Moose method modifier 'around'
around 'dbh' => sub {
   my $orig = shift;
   my $self = shift;
   
   my $species = $self->species;
   
   # Do we already have a dbh? HOW TO TEST THIS WITH HASH REF?
   if ($self->has_dbh) {

$self->log->debug(" gff-dbh for $species exists and is alive!"); return $self->$orig;

   } else {

$self->log->debug(" gff-dbh for $species doesn't exist yet; trying to connect"); my $dbh = $self->connect($species);

   }
};

Note also that these Services use Moose "Roles" to define shared methods and variables like connect().

Here's the acedb service:

http://bitbucket.org/tharris/wormbase/src/tip/lib/WormBase/API/Service/acedb.pm

The acedb service "consumes" the generic Service role:

http://bitbucket.org/tharris/wormbase/src/9009075c4c5a/lib/WormBase/API/Role/Service.pm

This nomenclature and structure is a bit confusing and probably needs to be streamlined/refined!!