Data mining:WormMart:Example 3

From WormBaseWiki
Jump to navigationJump to search

Download the set of all RNAi experiments that resulted in an embryonic lethal (Emb) phenotype, and in which the target genes are classified as serine/threonine kinases.

  • Start a new WormMart query and;
    • Select the latest database and the RNAi dataset
  • Within the Filter section;
    • Under Phenotype, Enable the Limit to Phenotype Primary Name filter, and select the embryonic lethal option,
  • Within the lower Dataset section;
    • For the Second Dataset select GO Term as we will use this dataset to filter for serine/threonone kinases,
    • Within the Go Term's Filter section, Enable the Limit to GO Term ID(s) filter, and enter GO:0004674 (protein serine/threonine kinase activity)



  • Within the RNAi Attribute section;
    • In the RNAi section, select RNAi WB ID,
    • In the Phenotype section, select Observed Phen Info (merged),
    • In the Inhibits Gene section, select Gene Info (merged),
    • In the Experiment section, select Author (merged)
  • Click <Results> button to produce the results shown [HERE].

<-Last ... Index of Examples