Data mining:WormMart:Example 3

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Download the set of all RNAi experiments that resulted in an embryonic lethal (Emb) phenotype, and in which the target genes are classified as serine/threonine kinases.

  • Start a new WormMart query and;
    • Select the RNAi dataset as shown [HERE]
    • Click <next> to proceed to the FILTER page.


  • ** In the 2'nd dataset Identification:Limit to GO Term ID(s) section, click the <browse> button to bring up a GO Term search page [HERE]
    • Type the search term serine threonine kinase into the Search box, and click <Search GO>, which brings you [HERE]
    • Looking through the result list, GO:0004674 (protein serine/threonine kinase activity) seems best,
    • Back on the MartView FILTER page, Enable the Limit to GO Term ID(s) filter, and paste GO:0004674 into the text box,
    • The above selection is shown [HERE],
    • Click <next> to proceed to the OUTPUT page.
  • On the OUTPUT page;
    • In the RNAi section, select RNAi WB ID,
    • In the Phenotype section, select Observed Phen Info (merged),
    • In the Inhibits Gene section, select Gene Info (merged),
    • In the Experiment section, select Author (merged)
    • The above selection is shown [HERE],
    • Click export to produce the results shown [HERE].

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