Data mining:WormMart:Example 3

From WormBaseWiki
Jump to navigationJump to search

Download the set of all RNAi experiments that resulted in an embryonic lethal (Emb) phenotype, and in which the target genes are classified as serine/threonine kinases.

  • Start a new WormMart query and;
    • Select the RNAi dataset as shown [HERE]
    • Click <next> to proceed to the FILTER page.

[HERE]],

  • ** In the 2'nd dataset Identification:Limit to GO Term ID(s) section, click the <browse> button to bring up a GO Term search page [HERE]
    • Type the search term serine threonine kinase into the Search box, and click <Search GO>, which brings you [HERE]
    • Looking through the result list, GO:0004674 (protein serine/threonine kinase activity) seems best,
    • Back on the MartView FILTER page, Enable the Limit to GO Term ID(s) filter, and paste GO:0004674 into the text box,
    • The above selection is shown [HERE],
    • Click <next> to proceed to the OUTPUT page.
  • On the OUTPUT page;
    • In the RNAi section, select RNAi WB ID,
    • In the Phenotype section, select Observed Phen Info (merged),
    • In the Inhibits Gene section, select Gene Info (merged),
    • In the Experiment section, select Author (merged)
    • The above selection is shown [HERE],
    • Click export to produce the results shown [HERE].

<-Last ... Index of Examples