Difference between revisions of "Data mining:WormMart:Example 1 new"
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=== Example 1: List all synonyms for the following genes; bli-1, egl-43, lag-1 === | === Example 1: List all synonyms for the following genes; bli-1, egl-43, lag-1 === | ||
− | *Start a new WormMart query: [http:// | + | *Start a new WormMart query: [http://caprica.caltech.edu:9002/biomart/martview/ [HERE]]. |
*Select the '''current''' WormBase release, and the '''Gene''' dataset from the options. | *Select the '''current''' WormBase release, and the '''Gene''' dataset from the options. | ||
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*Click the '''attributes''' node on the left panel, expand the '''identification''' section and enable the '''Gene Names (merged)''' attribute in addition to the default attributes that are already selected. | *Click the '''attributes''' node on the left panel, expand the '''identification''' section and enable the '''Gene Names (merged)''' attribute in addition to the default attributes that are already selected. | ||
− | *On clicking the '''results''' button in the top menu the results should be displayed, as shown [http:// | + | *On clicking the '''results''' button in the top menu the results should be displayed, as shown [http://caprica.caltech.edu:9002/biomart/martview?VIRTUALSCHEMANAME=default&FILTERS=wormbase_gene.default.filters.identity_status.%22Live%22|wormbase_gene.default.filters.public_name.%22bli-1,egl-43,lag-1%22|wormbase_gene.default.filters.species_selection.%22Caenorhabditis%20elegans%22&ATTRIBUTES=wormbase_gene.default.attributes.gene|wormbase_gene.default.attributes.name_dmlist|wormbase_gene.default.attributes.public_name [HERE]] |
[[Data mining:WormMart|Index of Examples]] ... [[Data mining:WormMart:Example 2|Next->]] | [[Data mining:WormMart|Index of Examples]] ... [[Data mining:WormMart:Example 2|Next->]] | ||
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+ | [[Category:User Guide]] |
Latest revision as of 10:44, 31 January 2013
Example 1: List all synonyms for the following genes; bli-1, egl-43, lag-1
- Start a new WormMart query: [HERE].
- Select the current WormBase release, and the Gene dataset from the options.
- Click the filters node on the left panel, expand the identification section, select the [Gene] Public/CGC name option from [Gene] ID(s) of Type, and paste bli-1,egl-43,lag-1 into the text box.
- If you click the count button in the top menu you should see that there are three genes returned by the query.
- Click the attributes node on the left panel, expand the identification section and enable the Gene Names (merged) attribute in addition to the default attributes that are already selected.
- On clicking the results button in the top menu the results should be displayed, as shown [HERE]