Difference between revisions of "Data mining:WormMart:Example 1 new"

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=== Example 1: List all synonyms for the following genes; bli-1, egl-43, lag-1  ===
 
=== Example 1: List all synonyms for the following genes; bli-1, egl-43, lag-1  ===
  
*Start a new WormMart query: [http://dev.wormbase.org/biomart/martview [HERE]].
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*Start a new WormMart query: [http://caprica.caltech.edu:9002/biomart/martview/ [HERE]].
  
 
*Select the '''current''' WormBase release, and the '''Gene''' dataset from the options.
 
*Select the '''current''' WormBase release, and the '''Gene''' dataset from the options.
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*Click the '''attributes''' node on the left panel, expand the '''identification''' section and enable the '''Gene Names (merged)''' attribute in addition to the default attributes that are already selected.
 
*Click the '''attributes''' node on the left panel, expand the '''identification''' section and enable the '''Gene Names (merged)''' attribute in addition to the default attributes that are already selected.
  
*On clicking the '''results''' button in the top menu the results should be displayed, as shown [http://www.wormbase.org/biomart/martview?VIRTUALSCHEMANAME=default&FILTERS=wormbase_gene.default.filters.identity_status.%22Live%22|wormbase_gene.default.filters.public_name.%22bli-1,egl-43,lag-1%22|wormbase_gene.default.filters.species_selection.%22Caenorhabditis%20elegans%22&ATTRIBUTES=wormbase_gene.default.attributes.gene|wormbase_gene.default.attributes.name_dmlist|wormbase_gene.default.attributes.public_name [HERE]]
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*On clicking the '''results''' button in the top menu the results should be displayed, as shown [http://caprica.caltech.edu:9002/biomart/martview?VIRTUALSCHEMANAME=default&FILTERS=wormbase_gene.default.filters.identity_status.%22Live%22|wormbase_gene.default.filters.public_name.%22bli-1,egl-43,lag-1%22|wormbase_gene.default.filters.species_selection.%22Caenorhabditis%20elegans%22&ATTRIBUTES=wormbase_gene.default.attributes.gene|wormbase_gene.default.attributes.name_dmlist|wormbase_gene.default.attributes.public_name [HERE]]
  
 
[[Data mining:WormMart|Index of Examples]] ... [[Data mining:WormMart:Example 2|Next->]]
 
[[Data mining:WormMart|Index of Examples]] ... [[Data mining:WormMart:Example 2|Next->]]
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[[Category:User Guide]]

Latest revision as of 10:44, 31 January 2013

Example 1: List all synonyms for the following genes; bli-1, egl-43, lag-1

  • Start a new WormMart query: [HERE].
  • Select the current WormBase release, and the Gene dataset from the options.
  • Click the filters node on the left panel, expand the identification section, select the [Gene] Public/CGC name option from [Gene] ID(s) of Type, and paste bli-1,egl-43,lag-1 into the text box.
  • If you click the count button in the top menu you should see that there are three genes returned by the query.
  • Click the attributes node on the left panel, expand the identification section and enable the Gene Names (merged) attribute in addition to the default attributes that are already selected.
  • On clicking the results button in the top menu the results should be displayed, as shown [HERE]

Index of Examples ... Next->