Data mining:WormMart:Example 1

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Revision as of 03:16, 24 September 2007 by Tharris (talk | contribs) (New page: === Example 1: List all synonyms for the following genes; bli-1, egl-43, lag-1 === * Start a new WormMart query: [http://www.wormbase.org/biomart/martview [HERE]]. * On the '''START''' p...)
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Example 1: List all synonyms for the following genes; bli-1, egl-43, lag-1

  • Start a new WormMart query: [HERE].
  • On the START page;
    • Select the Gene dataset.
    • The <count> button on the right of the page will report the number of genes in the dataset in the Summary section, as shown [HERE].
    • Click <next> to proceed to the FILTER page.
  • On the FILTER page;
    • In the Identification section, enable the Limit to Gene ID(s) of Type - Public/CGC Name filter,
    • Paste the gene IDs bli-1, egl-43, lag-1 into the text box,
    • Click <count> to update the page, as shown [HERE]
    • Click <next> to proceed to the OUTPUT page.
  • On the OUTPUT page, in the IDENTIFICATION - IDs section;
    • Enable the Gene Public Name and Gene Names (merged) attributes as shown [HERE]
    • Click the <export> button, which will load the results as shown on this [HERE].
  • Note that the gene synonyms in the export are combined in a single table cell. To get a row per synonym rather than a row per gene;
    • Return to the OUTPUT page,
    • Disable the Gene Names (merged) attribute,
    • Enable the Gene Name (All) attribute,
    • Click the <export> button, which will load the results as shown on this [HERE].


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