Difference between revisions of "Data mining:WormMart:Example 1"

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*On initial page;  
 
*On initial page;  
 
**Select the latest database release,  
 
**Select the latest database release,  
**Select the '''Gene''' dataset, as shown [[http://www.wormbase.org/biomart/martview?VIRTUALSCHEMANAME=default&ATTRIBUTES=wormbase_gene.default.attributes.gene|wormbase_gene.default.attributes.public_name&FILTERS=wormbase_gene.default.filters.species_selection."Caenorhabditis elegans"|wormbase_gene.default.filters.identity_status."Live"&VISIBLEPANEL=mainpanel HERE]].  
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**Select the '''Gene''' dataset, as shown [http://www.wormbase.org/biomart/martview?VIRTUALSCHEMANAME=default&ATTRIBUTES=wormbase_gene.default.attributes.gene|wormbase_gene.default.attributes.public_name&FILTERS=wormbase_gene.default.filters.species_selection. "Caenorhabditis elegans"|wormbase_gene.default.filters.identity_status."Live"&VISIBLEPANEL=mainpanel HERE]].  
 
**The '''<count>''' button on the top left of the page will report the number of genes in the dataset.
 
**The '''<count>''' button on the top left of the page will report the number of genes in the dataset.
  

Revision as of 11:20, 21 May 2008

Example 1: List all synonyms for the following genes; bli-1, egl-43, lag-1

  • Start a new WormMart query: [HERE].
  • Click the Filters link in the navigation panel on the left of the page;
    • Expand the Identification section by clicking on it,
    • Enable the Limit to Gene ID(s) of Type - Public/CGC Name filter,
    • Paste the gene IDs bli-1, egl-43, lag-1 into the text box, as shown [HERE],
    • Click <count> to see the number of genes selected, 

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