Data mining

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Revision as of 02:31, 24 September 2007 by Tharris (talk | contribs) (New page: == Data Model == # About the WormBase data model - ''how data is stored and structured at WormBase'' # AceDB classes - ''A comprehensiv...)
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Data Model

  1. About the WormBase data model - how data is stored and structured at WormBase
  2. AceDB classes - A comprehensive list of AceDB classes
  3. AceDB classes tutorial -Examples and descriptions of commonly accessed classes at WormBase
  4. GFF2 features - Descriptions of features contained in the WormBase GFF2 genome annotation files

Query Languages

  1. AQL tutorial - Using the AceDB query language, AQL
  2. WQL tutorial - Using the WormBase query language, WQL


  1. WormMart


AcePerl, a Perl interface to AceDB/WormBase

  1. Mining AceDB/WormBase with AcePerl


  1. Mining WormBase with Bio::DB::GFF - extract sequence annotations en masse using this Perl module


  1. Linking To WormBase
  2. Converting Coordinates between releases