Difference between revisions of "Data mining"
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#[[Data mining:WQL tutorial|WQL tutorial]] - ''Using the WormBase query language, WQL'' -- DEPRECATED: moved to new site | #[[Data mining:WQL tutorial|WQL tutorial]] - ''Using the WormBase query language, WQL'' -- DEPRECATED: moved to new site | ||
| − | = WormMine = | + | == WormMine == |
[[ WormMine | Link to documentation]] | [[ WormMine | Link to documentation]] | ||
Revision as of 18:21, 11 July 2013
Contents
Data Model
- About the WormBase data model - how data is stored and structured at WormBase
- AceDB classes - A comprehensive list of AceDB classes
- AceDB classes tutorial -Examples and descriptions of commonly accessed classes at WormBase
- GFF2 features - Descriptions of features contained in the WormBase GFF2 genome annotation files
Query Languages
- AQL tutorial - Using the AceDB query language, AQL -- DEPRECATED: moved to new site
- WQL tutorial - Using the WormBase query language, WQL -- DEPRECATED: moved to new site
WormMine
WormMart
APIs
AcePerl, a Perl interface to AceDB/WormBase
Bio::DB::GFF
- Mining WormBase with Bio::DB::GFF - extract sequence annotations en masse using this Perl module
Miscellaneous
- Linking To WormBase
- Converting Coordinates between releases
- WormBase Identifiers - A quick guide to WormBase object identifiers
