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− | This lists all data sources contained in WormMine
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− | {| border="1"
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− | ! Source !! Description !! Source !! Species !! Data mapping
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− | |-
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− | | GO
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− | || Ontology terms and relationships comprising GO
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− | || GO project website.
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− | || N/A
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− | |-
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− | | GO Annotations
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− | || Relationships between Genes and GO
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− | || GO project website.
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− | || Caenorhabditis elegans
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− | |-
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− | | Genomic sequences
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− | || Fasta DNA sequences
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− | || WormBase FTP
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− | || Caenorhabditis elegans
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− | |-
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− | | Protein sequences
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− | || Fasta peptide sequences
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− | || WormBase FTP
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− | || Caenorhabditis elegans
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− | |-
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− | | Gene locations
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− | || Gene chromosomal coordinates
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− | || WormBase FTP GFF3
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− | || Caenorhabditis elegans
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− | |-
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− | | Transcript locations
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− | || Transcript chromosomal coordinates
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− | || WormBase FTP GFF3
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− | || Caenorhabditis elegans
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− | |-
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− | | CDS locations
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− | || CDS chromosomal coordinates
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− | || WormBase FTP GFF3
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− | || Caenorhabditis elegans
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− | |-
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− | | Gene metadata
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− | || Select fields extracted from Ace
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− | || AceDB XML dump
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− | || All in AceDB
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− | || [[WormMine Gene Ace mapping|LINK]]
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− | |-
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− | | Transcript metadata
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− | || Select fields extracted from Ace
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− | || AceDB XML dump
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− | || All in AceDB
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− | || [[WormMine Transcript Ace mapping|LINK]]
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− |
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− | |-
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− | | CDS metadata
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− | || Select fields extracted from Ace
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− | || AceDB XML dump
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− | || All in AceDB
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− | || [[WormMine CDS Ace mapping|LINK]]
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− | |-
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− | | Variation metadata
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− | || Select fields extracted from Ace
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− | || AceDB XML dump
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− | || All in AceDB
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− | || [[WormMine Variation Ace mapping|LINK]]
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− | |-
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− | | Protein metadata
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− | || Select fields extracted from Ace
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− | || AceDB XML dump
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− | || All in AceDB
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− | || [[WormMine Protein Ace mapping|LINK]]
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− | |-
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− | | Phenotype metadata
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− | || Select fields extracted from Ace
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− | || AceDB XML dump
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− | || All in AceDB
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− | || [[WormMine Phenotype Ace mapping|LINK]]
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− | |-
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− | | Expression Pattern metadata
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− | || Select fields extracted from Ace
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− | || AceDB XML dump
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− | || All in AceDB
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− | || [[WormMine Expr_pattern Ace mapping|LINK]]
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− | |-
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− | | Anatomy Term metadata
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− | || Select fields extracted from Ace
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− | || AceDB XML dump
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− | || All in AceDB
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− | || [[WormMine Anatomy_term Ace mapping|LINK]]
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− | |-
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− | | Expression Cluster metadata
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− | || Select fields extracted from Ace
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− | || AceDB XML dump
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− | || All in AceDB
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− | || [[WormMine Expr_cluster Ace mapping|LINK]]
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− | |-
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− | | Life Stage metadata
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− | || Select fields extracted from Ace
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− | || AceDB XML dump
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− | || All in AceDB
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− | || [[WormMine Life_stage Ace mapping|LINK]]
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− | |}
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