Difference between revisions of "Data contained in WormMine"

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This lists all data sources contained in WormMine
 
  
{| border="1"
 
! Source !! Description !! Source !! Species !! Data mapping
 
 
|-
 
|  GO
 
|| Ontology terms and relationships comprising GO
 
|| GO project website.
 
|| N/A
 
 
|-
 
|  GO Annotations
 
|| Relationships between Genes and GO
 
|| GO project website.
 
|| Caenorhabditis elegans
 
 
|-
 
|  Genomic sequences
 
|| Fasta DNA sequences
 
|| WormBase FTP
 
|| Caenorhabditis elegans
 
 
|-
 
|  Protein sequences
 
|| Fasta peptide sequences
 
|| WormBase FTP
 
|| Caenorhabditis elegans
 
 
|-
 
|  Gene locations
 
|| Gene chromosomal coordinates
 
|| WormBase FTP GFF3
 
|| Caenorhabditis elegans
 
 
|-
 
|  Transcript locations
 
|| Transcript chromosomal coordinates
 
|| WormBase FTP GFF3
 
|| Caenorhabditis elegans
 
 
|-
 
|  CDS locations
 
|| CDS chromosomal coordinates
 
|| WormBase FTP GFF3
 
|| Caenorhabditis elegans
 
 
|-
 
|  Gene metadata
 
|| Select fields extracted from Ace
 
|| AceDB XML dump
 
|| All in AceDB
 
|| [[WormMine Gene Ace mapping|LINK]]
 
 
|-
 
|  Transcript metadata
 
|| Select fields extracted from Ace
 
|| AceDB XML dump
 
|| All in AceDB
 
|| [[WormMine Transcript Ace mapping|LINK]]
 
 
|-
 
|  CDS metadata
 
|| Select fields extracted from Ace
 
|| AceDB XML dump
 
|| All in AceDB
 
|| [[WormMine CDS Ace mapping|LINK]]
 
 
|-
 
|  Variation metadata
 
|| Select fields extracted from Ace
 
|| AceDB XML dump
 
|| All in AceDB
 
|| [[WormMine Variation Ace mapping|LINK]]
 
 
|-
 
|  Protein metadata
 
|| Select fields extracted from Ace
 
|| AceDB XML dump
 
|| All in AceDB
 
|| [[WormMine Protein Ace mapping|LINK]]
 
 
|-
 
|  Phenotype metadata
 
|| Select fields extracted from Ace
 
|| AceDB XML dump
 
|| All in AceDB
 
|| [[WormMine Phenotype Ace mapping|LINK]]
 
 
|-
 
|  Expression Pattern metadata
 
|| Select fields extracted from Ace
 
|| AceDB XML dump
 
|| All in AceDB
 
|| [[WormMine Expr_pattern Ace mapping|LINK]]
 
 
|-
 
|  Anatomy Term metadata
 
|| Select fields extracted from Ace
 
|| AceDB XML dump
 
|| All in AceDB
 
|| [[WormMine Anatomy_term Ace mapping|LINK]]
 
 
|-
 
|  Expression Cluster metadata
 
|| Select fields extracted from Ace
 
|| AceDB XML dump
 
|| All in AceDB
 
|| [[WormMine Expr_cluster Ace mapping|LINK]]
 
 
|-
 
|  Life Stage metadata
 
|| Select fields extracted from Ace
 
|| AceDB XML dump
 
|| All in AceDB
 
|| [[WormMine Life_stage Ace mapping|LINK]]
 
 
|}
 

Revision as of 20:23, 2 May 2013