Difference between revisions of "Data contained in WormMine"
From WormBaseWiki
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| Gene metadata | | Gene metadata | ||
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|| AceDB XML dump | || AceDB XML dump | ||
|| All in AceDB | || All in AceDB | ||
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| Transcript metadata | | Transcript metadata | ||
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|| AceDB XML dump | || AceDB XML dump | ||
|| All in AceDB | || All in AceDB | ||
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| CDS metadata | | CDS metadata | ||
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|| AceDB XML dump | || AceDB XML dump | ||
|| All in AceDB | || All in AceDB | ||
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| Variation metadata | | Variation metadata | ||
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|| AceDB XML dump | || AceDB XML dump | ||
|| All in AceDB | || All in AceDB | ||
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| Protein metadata | | Protein metadata | ||
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|| AceDB XML dump | || AceDB XML dump | ||
|| All in AceDB | || All in AceDB | ||
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| Phenotype metadata | | Phenotype metadata | ||
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|| AceDB XML dump | || AceDB XML dump | ||
|| All in AceDB | || All in AceDB | ||
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| Expression Pattern metadata | | Expression Pattern metadata | ||
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|| AceDB XML dump | || AceDB XML dump | ||
|| All in AceDB | || All in AceDB | ||
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| Anatomy Term metadata | | Anatomy Term metadata | ||
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|| AceDB XML dump | || AceDB XML dump | ||
|| All in AceDB | || All in AceDB | ||
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| Expression Cluster metadata | | Expression Cluster metadata | ||
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|| AceDB XML dump | || AceDB XML dump | ||
|| All in AceDB | || All in AceDB | ||
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| Life Stage metadata | | Life Stage metadata | ||
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|| AceDB XML dump | || AceDB XML dump | ||
|| All in AceDB | || All in AceDB | ||
Revision as of 20:20, 2 May 2013
This lists all data sources contained in WormMine
| Source | Description | Source | Species | Data mapping |
|---|---|---|---|---|
| GO | Ontology terms and relationships comprising GO | GO project website. | N/A | |
| GO Annotations | Relationships between Genes and GO | GO project website. | Caenorhabditis elegans | |
| Genomic sequences | Fasta DNA sequences | WormBase FTP | Caenorhabditis elegans | |
| Protein sequences | Fasta peptide sequences | WormBase FTP | Caenorhabditis elegans | |
| Gene locations | Gene chromosomal coordinates | WormBase FTP GFF3 | Caenorhabditis elegans | |
| Transcript locations | Transcript chromosomal coordinates | WormBase FTP GFF3 | Caenorhabditis elegans | |
| CDS locations | CDS chromosomal coordinates | WormBase FTP GFF3 | Caenorhabditis elegans | |
| Gene metadata | Select fields extracted from Ace | AceDB XML dump | All in AceDB | LINK |
| Transcript metadata | Select fields extracted from Ace | AceDB XML dump | All in AceDB | LINK |
| CDS metadata | Select fields extracted from Ace | AceDB XML dump | All in AceDB | LINK |
| Variation metadata | Select fields extracted from Ace | AceDB XML dump | All in AceDB | LINK |
| Protein metadata | Select fields extracted from Ace | AceDB XML dump | All in AceDB | LINK |
| Phenotype metadata | Select fields extracted from Ace | AceDB XML dump | All in AceDB | LINK |
| Expression Pattern metadata | Select fields extracted from Ace | AceDB XML dump | All in AceDB | LINK |
| Anatomy Term metadata | Select fields extracted from Ace | AceDB XML dump | All in AceDB | LINK |
| Expression Cluster metadata | Select fields extracted from Ace | AceDB XML dump | All in AceDB | LINK |
| Life Stage metadata | Select fields extracted from Ace | AceDB XML dump | All in AceDB | LINK |
