Difference between revisions of "Data contained in WormMine"
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| − | + | ! Source !! Description !! Source !! Species !! Data mapping | |
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Revision as of 20:11, 2 May 2013
This lists all data sources contained in WormMine
| Source | Description | Source | Species | Data mapping |
|---|---|---|---|---|
| GO | Ontology terms and relationships comprising GO | GO project website. | N/A | |
| GO Annotations | Relationships between Genes and GO | GO project website. | Caenorhabditis elegans | |
| Genomic sequences | Fasta DNA sequences | WormBase FTP | Caenorhabditis elegans | |
| Protein sequences | Fasta peptide sequences | WormBase FTP | Caenorhabditis elegans | |
| Gene locations | Gene chromosomal coordinates | WormBase FTP GFF3 | Caenorhabditis elegans | |
| Transcript locations | Transcript chromosomal coordinates | WormBase FTP GFF3 | Caenorhabditis elegans | |
| CDS locations | CDS chromosomal coordinates | WormBase FTP GFF3 | Caenorhabditis elegans | |
| Gene metadata | AceDB XML dump | All in AceDB | LINK | |
| Transcript metadata | AceDB XML dump | All in AceDB | LINK | |
| CDS metadata | AceDB XML dump | All in AceDB | LINK | |
| Variation metadata | AceDB XML dump | All in AceDB | LINK | |
| Protein metadata | AceDB XML dump | All in AceDB | LINK | |
| Phenotype metadata | AceDB XML dump | All in AceDB | LINK | |
| Expression Pattern metadata | AceDB XML dump | All in AceDB | LINK | |
| Anatomy Term metadata | AceDB XML dump | All in AceDB | LINK | |
| Expression Cluster metadata | AceDB XML dump | All in AceDB | LINK | |
| Life Stage metadata | AceDB XML dump | All in AceDB | LINK
|
