Difference between revisions of "Data contained in WormMine"
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− | | | + | | Gene metadata |
|| | || | ||
+ | || AceDB XML dump | ||
+ | || All in AceDB | ||
+ | || [[WormMine Gene Ace mapping|LINK]] | ||
+ | |||
+ | |- | ||
+ | | Transcript metadata | ||
|| | || | ||
+ | || AceDB XML dump | ||
+ | || All in AceDB | ||
+ | || [[WormMine Transcript Ace mapping|LINK]] | ||
+ | |||
+ | |- | ||
+ | | CDS metadata | ||
|| | || | ||
+ | || AceDB XML dump | ||
+ | || All in AceDB | ||
+ | || [[WormMine CDS Ace mapping|LINK]] | ||
+ | |||
+ | |- | ||
+ | | Variation metadata | ||
+ | || | ||
+ | || AceDB XML dump | ||
+ | || All in AceDB | ||
+ | || [[WormMine Variation Ace mapping|LINK]] | ||
+ | |||
+ | |- | ||
+ | | Protein metadata | ||
+ | || | ||
+ | || AceDB XML dump | ||
+ | || All in AceDB | ||
+ | || [[WormMine Protein Ace mapping|LINK]] | ||
+ | |||
+ | |- | ||
+ | | Phenotype metadata | ||
+ | || | ||
+ | || AceDB XML dump | ||
+ | || All in AceDB | ||
+ | || [[WormMine Phenotype Ace mapping|LINK]] | ||
+ | |||
+ | |- | ||
+ | | Expression Pattern metadata | ||
+ | || | ||
+ | || AceDB XML dump | ||
+ | || All in AceDB | ||
+ | || [[WormMine Expr_pattern Ace mapping|LINK]] | ||
+ | |||
+ | |- | ||
+ | | Anatomy Term metadata | ||
+ | || | ||
+ | || AceDB XML dump | ||
+ | || All in AceDB | ||
+ | || [[WormMine Anatomy_term Ace mapping|LINK]] | ||
+ | |||
+ | |- | ||
+ | | Expression Cluster metadata | ||
+ | || | ||
+ | || AceDB XML dump | ||
+ | || All in AceDB | ||
+ | || [[WormMine Expr_cluster Ace mapping|LINK]] | ||
+ | |||
+ | |- | ||
+ | | Life Stage metadata | ||
+ | || | ||
+ | || AceDB XML dump | ||
+ | || All in AceDB | ||
+ | || [[WormMine Life_stage Ace mapping|LINK]] | ||
+ | |||
|} | |} |
Revision as of 19:16, 2 May 2013
This lists all data sources contained in WormMine
Source | Description | Source | Species | Data mapping |
GO | Ontology terms and relationships comprising GO | GO project website. | N/A | |
GO Annotations | Relationships between Genes and GO | GO project website. | Caenorhabditis elegans | |
Genomic sequences | Fasta DNA sequences | WormBase FTP | Caenorhabditis elegans | |
Protein sequences | Fasta peptide sequences | WormBase FTP | Caenorhabditis elegans | |
Gene locations | Gene chromosomal coordinates | WormBase FTP GFF3 | Caenorhabditis elegans | |
Transcript locations | Transcript chromosomal coordinates | WormBase FTP GFF3 | Caenorhabditis elegans | |
CDS locations | CDS chromosomal coordinates | WormBase FTP GFF3 | Caenorhabditis elegans | |
Gene metadata | AceDB XML dump | All in AceDB | LINK | |
Transcript metadata | AceDB XML dump | All in AceDB | LINK | |
CDS metadata | AceDB XML dump | All in AceDB | LINK | |
Variation metadata | AceDB XML dump | All in AceDB | LINK | |
Protein metadata | AceDB XML dump | All in AceDB | LINK | |
Phenotype metadata | AceDB XML dump | All in AceDB | LINK | |
Expression Pattern metadata | AceDB XML dump | All in AceDB | LINK | |
Anatomy Term metadata | AceDB XML dump | All in AceDB | LINK | |
Expression Cluster metadata | AceDB XML dump | All in AceDB | LINK | |
Life Stage metadata | AceDB XML dump | All in AceDB | LINK
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