Difference between revisions of "Data contained in WormMine"
From WormBaseWiki
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{| border="1" | {| border="1" | ||
| − | | Source || Description || Source || Species | + | | Source || Description || Source || Species || Data mapping |
| + | |||
|- | |- | ||
| GO | | GO | ||
| Line 8: | Line 9: | ||
|| GO project website. | || GO project website. | ||
|| N/A | || N/A | ||
| + | |||
|- | |- | ||
| GO Annotations | | GO Annotations | ||
| Line 13: | Line 15: | ||
|| GO project website. | || GO project website. | ||
|| Caenorhabditis elegans | || Caenorhabditis elegans | ||
| + | |||
|- | |- | ||
| Genomic sequences | | Genomic sequences | ||
| Line 18: | Line 21: | ||
|| WormBase FTP | || WormBase FTP | ||
|| Caenorhabditis elegans | || Caenorhabditis elegans | ||
| + | |||
|- | |- | ||
| Protein sequences | | Protein sequences | ||
| Line 23: | Line 27: | ||
|| WormBase FTP | || WormBase FTP | ||
|| Caenorhabditis elegans | || Caenorhabditis elegans | ||
| + | |||
|- | |- | ||
| + | | Gene locations | ||
| + | || Gene chromosomal coordinates | ||
| + | || WormBase FTP GFF3 | ||
| + | || Caenorhabditis elegans | ||
| + | |||
| + | |- | ||
| + | | Transcript locations | ||
| + | || Transcript chromosomal coordinates | ||
| + | || WormBase FTP GFF3 | ||
| + | || Caenorhabditis elegans | ||
| + | |||
| + | |- | ||
| + | | CDS locations | ||
| + | || CDS chromosomal coordinates | ||
| + | || WormBase FTP GFF3 | ||
| + | || Caenorhabditis elegans | ||
| + | |||
| + | |- | ||
| + | | | ||
| + | || | ||
| + | || | ||
| + | || | ||
|} | |} | ||
Revision as of 19:07, 2 May 2013
This lists all data sources contained in WormMine
| Source | Description | Source | Species | Data mapping |
| GO | Ontology terms and relationships comprising GO | GO project website. | N/A | |
| GO Annotations | Relationships between Genes and GO | GO project website. | Caenorhabditis elegans | |
| Genomic sequences | Fasta DNA sequences | WormBase FTP | Caenorhabditis elegans | |
| Protein sequences | Fasta peptide sequences | WormBase FTP | Caenorhabditis elegans | |
| Gene locations | Gene chromosomal coordinates | WormBase FTP GFF3 | Caenorhabditis elegans | |
| Transcript locations | Transcript chromosomal coordinates | WormBase FTP GFF3 | Caenorhabditis elegans | |
| CDS locations | CDS chromosomal coordinates | WormBase FTP GFF3 | Caenorhabditis elegans | |
