Difference between revisions of "Data and display problems of GO annotations in WormBase"

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1. Several versions of GO terms exist (deprecated, secondary IDs and current), eg., the term 'aging', at least two aging terms come up. (ontology file issue, both exist in the file)
 
1. Several versions of GO terms exist (deprecated, secondary IDs and current), eg., the term 'aging', at least two aging terms come up. (ontology file issue, both exist in the file)
 +
 
GO:0007568
 
GO:0007568
  
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2. GO-gene associations exist without any supporting evidences--evidence codes, papers etc; (this is an ontology file issue)
 
2. GO-gene associations exist without any supporting evidences--evidence codes, papers etc; (this is an ontology file issue)
  
3. For some terms the ancestor and/or descendent list is huge, several thousand and many of these look wrong. eg.,GO:0007192:adenylate cyclase-activating serotonin receptor signaling pathway has 92 ancestors and 14,285 children. (ontology file issue)
+
3. For some terms the ancestor and/or descendent list is huge, several thousand and many of these look wrong. eg.,GO:0007192:adenylate cyclase-activating serotonin receptor signaling pathway has 92 ancestors and 14,285 children. (ontology file issue, checked in Amigo, has 19 ancestors and no children)
(Checked in Amigo, has 19 ancestors and no children)
 

Revision as of 16:51, 12 June 2013

1. Several versions of GO terms exist (deprecated, secondary IDs and current), eg., the term 'aging', at least two aging terms come up. (ontology file issue, both exist in the file)

GO:0007568

GO:0016280


2. GO-gene associations exist without any supporting evidences--evidence codes, papers etc; (this is an ontology file issue)

3. For some terms the ancestor and/or descendent list is huge, several thousand and many of these look wrong. eg.,GO:0007192:adenylate cyclase-activating serotonin receptor signaling pathway has 92 ancestors and 14,285 children. (ontology file issue, checked in Amigo, has 19 ancestors and no children)