Difference between revisions of "Contacting the Community"

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==E-mailing the community==
 
==E-mailing the community==
 +
From Juancarlos:
 
On tazendra, in this directory :
 
On tazendra, in this directory :
 
/home/postgres/work/pgpopulation/concise_description/20150702_papgenes_after_lastupdate
 
/home/postgres/work/pgpopulation/concise_description/20150702_papgenes_after_lastupdate

Revision as of 21:37, 18 September 2015

E-mailing the community

From Juancarlos: On tazendra, in this directory : /home/postgres/work/pgpopulation/concise_description/20150702_papgenes_after_lastupdate

  • gene_to_published_after - has a set of WBGenes + locus + count of papers + list of papers with a gene connection after the gene's date last updated (unsorted, but if you copy the file to your machine and put it in excel or something like that, you can sort it)
  • pis_to_papers_with_genes_published_after - has PIs sorted in descending order by count of papers that mention a gene that has a gene connection after the gene's date last updated. So, possibly some papers have multiple genes, but are counted just once.
  • This script takes some 40 minutes to run, because we're taking the date last updated, then for each of the 138056 doing a separate query to get paper-gene connections with a timestamp after that. So if we keep working on this script, it'd be kind-of-good to work out what we want since it takes so (relatively) long to run.
  • Chris has a similar list for newmutant-flagged papers that still need curation, so you can both talk about what you want to do next.

Letter for Community Annotation

Dear Dr. <name>
WormBase appreciates any help it can receive in the form of community annotation, even more so for 
non-elegans species. We have identified you and your lab as members of the worm community, that 
can contribute valuable gene function data to WormBase, in the form of free-text, brief gene 
descriptions.  Descriptions will be properly attributed to their authors and displayed on the website. 
Please  use the attached form to submit gene descriptions, the form includes guidelines and other details 
about how to write them.
Thank-you and Regards
WormBase Consortium