Difference between revisions of "Comparison CGI"

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== Comparative analysis==
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https://docs.google.com/spreadsheets/d/1QnRd0TE7zZGC4ThQvLX1d-9sQH2luqrYLb_A26o8WCE/edit#gid=579706084
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=Tables=
 
=Tables=
  

Revision as of 18:05, 8 February 2017

Comparative analysis

https://docs.google.com/spreadsheets/d/1QnRd0TE7zZGC4ThQvLX1d-9sQH2luqrYLb_A26o8WCE/edit#gid=579706084

Tables

1) Comparison table

For each WBPaper, list Gene present both in lego cc and OA curated for GO term

WBPaper Gene1| legocc GO terms| OA GO term Gene2| legocc GO terms| OA GO term

2) Table that has only GO for legoCC

WBPaper Gene1| legocc GO terms| OA blank Gene2| legocc GO terms| OA blank

3) Table that has only OA for legoCC

Gene1| legocc blank| OA GO terms


for the genes that have lego GO_CC and no GO term annotation in OA we should import (only IDA) objects that should be further evaluated by Expression curator to add transgene antibody info, should be labeled with Kimberly as curator and have a no dump.

Stats

  • number of papers curated for OA GO_term and not for legocc
  • number of papers curated for legocc and not for OA GO_term
  • number of papers that have matching annotations
  • number of papers that have discrepancies