Difference between revisions of "CSHL documentation"

From WormBaseWiki
Jump to navigationJump to search
 
(12 intermediate revisions by 2 users not shown)
Line 5: Line 5:
 
== Development ==
 
== Development ==
  
* [[Formal_development_strategy|Formal development strategy]] - ''An overview of the development process at WormBase''
 
* [[Developer_notes|Developer notes]] - ''Best practices, conventions, etc''
 
* [[Using_private_development_sites|Using private development sites]] - ''How to use the private, self-contained developer sites on brie3''
 
 
* [[Javascript_libraries|Javascript libraries]] - ''Javascript libraries in use at WormBase''
 
* [[Javascript_libraries|Javascript libraries]] - ''Javascript libraries in use at WormBase''
 
** [[Using_collapsible_sections|Using collapsible sections]] - ''API for DHTML open/close sections''
 
** [[Using_collapsible_sections|Using collapsible sections]] - ''API for DHTML open/close sections''
Line 24: Line 21:
 
* [[Importing PFAM Images|Importing PFAM images]] - ''Importing protein structure images for PFAM domains on the gene page''
 
* [[Importing PFAM Images|Importing PFAM images]] - ''Importing protein structure images for PFAM domains on the gene page''
 
* [[Geographic Displays|Geographic displays]] - ''Geographic map displays''
 
* [[Geographic Displays|Geographic displays]] - ''Geographic map displays''
* [[Establishing the SVN repository]] - ''Setting up the subversion repository''
 
  
 
== Administration ==
 
== Administration ==
Line 31: Line 27:
  
 
* [[WormBase_Infrastructure|WormBase Infrastructure]]
 
* [[WormBase_Infrastructure|WormBase Infrastructure]]
* [[Building_and_configuring_Squid_for_WormBase|Building and configuring the front end caching server]]
 
  
 
=== General Admin ===
 
=== General Admin ===
  
 
* [[Updating_WormBase|Updating WormBase]]
 
* [[Updating_WormBase|Updating WormBase]]
* [[General_administration|General administration]]
+
 
* [[Monitoring_servers|Monitoring servers]]
 
* [[Emergency_plan_for_server_outtages|Emergency plan for server outtages]]
 
* [[Cronjobs|Cronjobs]]
 
 
* [[Managing_Perl_libraries_across_nodes|Managing Perl libraries across nodes]]
 
* [[Managing_Perl_libraries_across_nodes|Managing Perl libraries across nodes]]
* [[Site_statistics|Site statistics]]
+
 
* [[Creating_a_Google_Sitemap|Creating a Google Sitemap]]
 
 
* [[Optimizing_site_performance|Optimizing site performance]]
 
* [[Optimizing_site_performance|Optimizing site performance]]
* [[Log file management and analysis]]
 
 
=== Virtual Machines / Freezes ===
 
 
* [[How_to_build_a_WormBase_Virtual_Machine|How to build a WormBase Virtual Machine]] -- ''also describes how to create a VMX for a frozen release''
 
* [[Configuring_a_server_to_host_virtual_machines|Configuring a server to host virtual machines]] -- ''quick guide to setting up a frozen release server''
 
* [[Managing_servers_hosting_virtual_machines|Managing servers hosting virtual machines]]
 
* [[How_to_build_a_frozen_release|How to build a frozen release]] -- ''how to configure a WormBase VM as a frozen release server''
 
* [[Creating Virtual Disks]] - '' How to create VMDKs for unlimited portable storage''
 
 
= Update Checklist =
 
 
''See [[Updating_WormBase|Updating Wormbase]] for details.
 
  
[[Update checklist template]]
 
  
* [[WS188 update checklist|WS188]]
+
[[Category:Developer documentation]]

Latest revision as of 22:32, 24 December 2010

The WormBase Cold Spring Harbor team is in charge of developing, maintaining, and hosting WormBase. This page contains links to documentation relating to those topics.

Much of this documentation will be obsolete shortly. Please see Developer documentation for up-to-date documents.

Development

Administration

Hardware

General Admin