Difference between revisions of "CCC Form 2.0 Specifications"
From WormBaseWiki
Jump to navigationJump to search| Line 4: | Line 4: | ||
'''Tool Features''' | '''Tool Features''' | ||
| − | + | '''Textpresso search specifications''' | |
*Frequency | *Frequency | ||
*Corpus | *Corpus | ||
| Line 12: | Line 12: | ||
#Gene Ontology Gene Association File | #Gene Ontology Gene Association File | ||
*Ranking search results | *Ranking search results | ||
| + | *Naming search results file | ||
| + | |||
| + | '''Curation form''' | ||
| + | *Curator login | ||
| + | *Import of search results file | ||
| + | *Organization of search results file | ||
| + | *Selection of search results file for curation | ||
| + | *Display of paper bibliographic information | ||
| + | *Curation of selected sentences file | ||
| + | *Search functionality | ||
| + | #Gene | ||
| + | #Paper | ||
| + | #Curator | ||
| + | #Annotation date | ||
| + | #Component term in sentence | ||
| + | #GO term used for annotation | ||
| + | *Curation when all entities are recognized | ||
| + | *Curation when one or more entities is not recognized, needs to be added | ||
| + | *Feedback from form to Textpresso | ||
| + | #Enter a new gene name and identifier | ||
| + | #Enter a new component term in sentence, add to Textpresso cellular component category | ||
| + | #Edit a previous annotation | ||
| + | #Edit relationship index | ||
| + | #Export annotations | ||
| + | #To a MOD | ||
| + | #To Protein2GO | ||
| + | |||
| + | '''Files needed''' | ||
| + | #Mapping file for gene names and synonyms to MOD identifier and UniProtKB identifier | ||
Revision as of 20:28, 24 October 2012
This page is intended to document specifications for the next version of the Textpresso for Cellular Component Curation (CCC) tool. The changes to the tool, and pipeline, have been suggested by curators and are also part of the broader plan for Textpresso-based curation pipelines and the GO's Common Annotation Framework.
Tool Features
Textpresso search specifications
- Frequency
- Corpus
- Categories
- Filtering
- SVM
- Gene Ontology Gene Association File
- Ranking search results
- Naming search results file
Curation form
- Curator login
- Import of search results file
- Organization of search results file
- Selection of search results file for curation
- Display of paper bibliographic information
- Curation of selected sentences file
- Search functionality
- Gene
- Paper
- Curator
- Annotation date
- Component term in sentence
- GO term used for annotation
- Curation when all entities are recognized
- Curation when one or more entities is not recognized, needs to be added
- Feedback from form to Textpresso
- Enter a new gene name and identifier
- Enter a new component term in sentence, add to Textpresso cellular component category
- Edit a previous annotation
- Edit relationship index
- Export annotations
- To a MOD
- To Protein2GO
Files needed
- Mapping file for gene names and synonyms to MOD identifier and UniProtKB identifier
