Difference between revisions of "Building Frozen Releases"
From WormBaseWiki
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| − | == | + | = Hardware = |
| + | |||
| + | WormBase frozen releases are hosted on the virtualized server: | ||
| + | |||
| + | wb-dev2.oicr.on.ca | ||
| + | |||
| + | * 500 GB disk space | ||
| + | * 4 GB RAM | ||
| + | * Debian "Lenny" | ||
| + | |||
| + | = General structure of the server = | ||
| + | |||
| + | All WormBase-specific files are maintained in a shared directory. | ||
| + | |||
| + | ls /usr/local/wormbase | ||
| + | acedb/ | ||
| + | WS100 | ||
| + | WS110 | ||
| + | WS120 | ||
| + | ... | ||
| + | |||
| + | Each frozen release is a separate virtual host running under a single Apache instance. To prevent collision of libraries, version specific Perl modules are maintained in: | ||
| + | |||
| + | /usr/local/wormbase/VERSION/extlib | ||
| − | + | @INC is prepended with this path for each virtual host during apache launch. | |
| − | |||
| − | |||
| − | |||
== Installing Libraries == | == Installing Libraries == | ||
| Line 26: | Line 46: | ||
libglib | libglib | ||
byacc | byacc | ||
| + | |||
| + | == Fetch frozen releases == | ||
| + | |||
| + | $ ssh brie4 | ||
| + | $ cd ~ftp/pub/wormbase | ||
| + | $ screen | ||
| + | $ scp -r data_freezes wb-dev.oicr.on.ca:. | ||
Revision as of 18:06, 14 June 2009
Contents
Hardware
WormBase frozen releases are hosted on the virtualized server:
wb-dev2.oicr.on.ca
- 500 GB disk space
- 4 GB RAM
- Debian "Lenny"
General structure of the server
All WormBase-specific files are maintained in a shared directory.
ls /usr/local/wormbase
acedb/
WS100
WS110
WS120
...
Each frozen release is a separate virtual host running under a single Apache instance. To prevent collision of libraries, version specific Perl modules are maintained in:
/usr/local/wormbase/VERSION/extlib
@INC is prepended with this path for each virtual host during apache launch.
Installing Libraries
Assuming a vanilla Debian installation, install the following libaries via sudo apt-get install. Some of these libraries are discussed below.
gcc
curl
wget
bzip2
mysql-server
mysql-server-5.0
libgd2-xpm-dev
libgd2-xpm
xinetd
libdbd-mysql
libdbd-mysql-perl
apache2
libapache2-mod-perl2
libgtk2.0-0
libgtk2.0-dev
libglib
byacc
Fetch frozen releases
$ ssh brie4 $ cd ~ftp/pub/wormbase $ screen $ scp -r data_freezes wb-dev.oicr.on.ca:.
