Attaching Genes to Papers

Gene Associations Based Upon Abstracts

When papers are added to postgres using the Enter New Papers function of the Paper Editor, the corresponding abstracts are scanned, via a script, for matches to loci, sequence names, and synonyms.

Postgres tables used for this are:

gin_locus

gin_seqname

gin_synonyms

To view the contents of these tables, perform the following type of query using the referenceform.cgi:

SELECT * FROM gin_locus;

Updating the script:

The script that associates genes based upon abstracts does miss some genes because of the way they're expressed in the abstract.

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