Attaching Genes to Papers
Gene Associations Based Upon Abstracts
When papers are added to postgres using the Enter New Papers function of the Paper Editor, the corresponding abstracts are scanned, via a script, for matches to loci, sequence names, and synonyms.
Postgres tables used for this are:
gin_locus
gin_seqname
gin_synonyms
To view the contents of these tables, perform the following type of query using the referenceform.cgi:
SELECT * FROM gin_locus;
Updating the script:
The script that associates genes based upon abstracts does miss some genes because of the way they're expressed in the abstract.
Some ideas on what to change:
1) With the exception of a dash (-), split text (words or letters) from punctuation.
Papers where gene associations have been missed for re-training the script:
WBPaper00035164 - missed BLI-4
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