Difference between revisions of "Allele-sequence micropublications"
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http://www.wormbase.org/submissions/allele_sequence.cgi | http://www.wormbase.org/submissions/allele_sequence.cgi | ||
− | + | the title of the page should be changed from | |
− | + | Contribute allele-sequence details | |
− | |||
− | |||
− | We should | + | to |
+ | |||
+ | Micropublish allele-sequence data | ||
+ | |||
+ | this text | ||
+ | We would appreciate your help in adding allele-sequence data to WormBase. | ||
+ | Please fill out the form below. All fields with a * are required. | ||
+ | If you have any questions, please do not hesitate to contact WormBase at genenames@wormbase.org | ||
+ | |||
+ | should be changed into | ||
+ | Micropublish allele-sequence data! | ||
+ | Please fill out the form below. All fields with a * are required. | ||
+ | If you have any questions, please do not hesitate to contact us at micropublications@wormbase.org | ||
+ | |||
+ | |||
+ | We should do the same thing we will do with allele phenotype form and have a different display: | ||
* Add ORCID field below 'Your Name' field | * Add ORCID field below 'Your Name' field | ||
− | * Add -below 'Your e-mail address' field: | + | * Remove PubMedID |
− | + | ||
− | + | Add -below 'Your e-mail address' field: | |
− | + | * co-authors -> autocomplete on people | |
− | + | * Laboratory -> autocomplete on labs -> mandatory | |
− | + | * Funding -> free text -> mandatory | |
− | + | * Species -> autocomplete on species? | |
− | + | * Choose an image -> Browse button, only jpg accepted -> mandatory | |
− | + | * Description -> big text (small box that becomes big upon clicking) | |
+ | |||
+ | Move | ||
+ | * Allele Name ? | ||
+ | * Gene Name | ||
+ | * Sequence Name ? | ||
+ | in a separate section called 'allele details' | ||
+ | |||
+ | Below the Comment field add (see http://www.wormbase.org/submissions/expr_micropub.cgi) | ||
+ | * Publication Details | ||
+ | * Title of the Submission | ||
+ | * Suggested Reviewer | ||
+ | * Comments | ||
+ | * References -> Field that allows PMID entries | ||
+ | * Disclaimer -> mandatory checkbox like in the Expression micropublication form: I declare to the best of my knowledge that the experiment is reproducible. | ||
− | Mary Ann | + | Mary Ann implemented (May 2017) the following changes in the general form: |
* Under the Sequence Data section. | * Under the Sequence Data section. | ||
Add Engineered_allele (after deletion + insertion) to Type of Alteration | Add Engineered_allele (after deletion + insertion) to Type of Alteration | ||
Line 39: | Line 66: | ||
ZFNNHEJ_repair | ZFNNHEJ_repair | ||
</pre> | </pre> | ||
+ | |||
+ | Ideal<br> | ||
+ | Phenotype? -> supply button that submits allele data then shuttles user to modified phenotype form, that has been autopopulated with values already entered through this form |
Latest revision as of 17:10, 25 May 2017
Allele-sequence micropublications
we can reuse the allele-sequence submission form http://www.wormbase.org/submissions/allele_sequence.cgi
the title of the page should be changed from Contribute allele-sequence details
to
Micropublish allele-sequence data
this text We would appreciate your help in adding allele-sequence data to WormBase. Please fill out the form below. All fields with a * are required. If you have any questions, please do not hesitate to contact WormBase at genenames@wormbase.org
should be changed into Micropublish allele-sequence data! Please fill out the form below. All fields with a * are required. If you have any questions, please do not hesitate to contact us at micropublications@wormbase.org
We should do the same thing we will do with allele phenotype form and have a different display:
- Add ORCID field below 'Your Name' field
- Remove PubMedID
Add -below 'Your e-mail address' field:
- co-authors -> autocomplete on people
- Laboratory -> autocomplete on labs -> mandatory
- Funding -> free text -> mandatory
- Species -> autocomplete on species?
- Choose an image -> Browse button, only jpg accepted -> mandatory
- Description -> big text (small box that becomes big upon clicking)
Move
* Allele Name ? * Gene Name * Sequence Name ?
in a separate section called 'allele details'
Below the Comment field add (see http://www.wormbase.org/submissions/expr_micropub.cgi)
- Publication Details
- Title of the Submission
- Suggested Reviewer
- Comments
- References -> Field that allows PMID entries
- Disclaimer -> mandatory checkbox like in the Expression micropublication form: I declare to the best of my knowledge that the experiment is reproducible.
Mary Ann implemented (May 2017) the following changes in the general form:
- Under the Sequence Data section.
Add Engineered_allele (after deletion + insertion) to Type of Alteration
- Under the Origin section.
Add a new Field "Production Method" with "for engineered alleles" already entered the box if this is possible for a pull_down. If it's not possible then we need to add "for engineered alleles only" somewhere near that field.
Pull down should have
CRISPR_Cas9 Homologous_recombination MosSci MosDEL NHEJ TALENs ZFNNHEJ_repair ZFNNHEJ_repair
Ideal
Phenotype? -> supply button that submits allele data then shuttles user to modified phenotype form, that has been autopopulated with values already entered through this form