Difference between revisions of "Allele-sequence micropublications"

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(Created page with "==Allele-sequence micropublications== we can reuse the allele-sequence submission form http://www.wormbase.org/submissions/allele_sequence.cgi * Under the General section, ad...")
 
 
(13 intermediate revisions by 2 users not shown)
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http://www.wormbase.org/submissions/allele_sequence.cgi
 
http://www.wormbase.org/submissions/allele_sequence.cgi
  
* Under the General section, add the new field/question : Is this submission part of a micropublication [yes/no]
+
the title of the page should be changed from
Should be mandatory.
+
Contribute allele-sequence details
Should have green ? with explanation of what micropub is and a link to www.micropublicationbiology.org
+
 
 +
to
 +
 
 +
Micropublish allele-sequence data
 +
 
 +
this text 
 +
We would appreciate your help in adding allele-sequence data to WormBase.
 +
Please fill out the form below. All fields with a * are required.
 +
If you have any questions, please do not hesitate to contact WormBase at genenames@wormbase.org
 +
 
 +
should be changed into
 +
Micropublish allele-sequence data!
 +
Please fill out the form below. All fields with a * are required.
 +
If you have any questions, please do not hesitate to contact us at micropublications@wormbase.org
 +
 
 +
 
 +
We should do the same thing we will do with allele phenotype form and have a different display:
 +
* Add ORCID field below 'Your Name' field
 +
* Remove PubMedID
 +
 
 +
Add -below 'Your e-mail address' field:
 +
* co-authors -> autocomplete on people
 +
* Laboratory -> autocomplete on labs  -> mandatory
 +
* Funding -> free text  -> mandatory
 +
* Species -> autocomplete on species?
 +
* Choose an image -> Browse button, only jpg accepted  -> mandatory
 +
* Description -> big text (small box that becomes big upon clicking)
 +
 
 +
Move
 +
  * Allele Name ?
 +
  * Gene Name
 +
  * Sequence Name ?
 +
in a separate section called 'allele details'
 +
 
 +
Below the Comment field add (see http://www.wormbase.org/submissions/expr_micropub.cgi)
 +
* Publication Details
 +
* Title of the Submission
 +
* Suggested Reviewer
 +
* Comments
 +
* References -> Field that allows PMID entries
 +
* Disclaimer -> mandatory checkbox like in the Expression micropublication form: I declare to the best of my knowledge that the experiment is reproducible.
 +
 
 +
 
 +
Mary Ann implemented (May 2017) the following changes in the general form:
 +
* Under the Sequence Data section.
 +
Add Engineered_allele (after deletion + insertion) to Type of Alteration
 +
 
 +
* Under the Origin section.
 +
Add a new Field "Production Method" with "for engineered alleles" already entered the box if this is possible for a pull_down. If it's not possible then we need to add "for engineered alleles only" somewhere near that field.  
 +
 
 +
Pull down should have
 +
<pre>
 +
CRISPR_Cas9
 +
Homologous_recombination
 +
MosSci
 +
MosDEL
 +
NHEJ
 +
TALENs
 +
ZFNNHEJ_repair
 +
ZFNNHEJ_repair
 +
</pre>
 +
 
 +
Ideal<br>
 +
Phenotype? -> supply button that submits allele data then shuttles user to modified phenotype form, that has been autopopulated with values already entered through this form

Latest revision as of 17:10, 25 May 2017

Allele-sequence micropublications

we can reuse the allele-sequence submission form http://www.wormbase.org/submissions/allele_sequence.cgi

the title of the page should be changed from Contribute allele-sequence details

to

Micropublish allele-sequence data

this text We would appreciate your help in adding allele-sequence data to WormBase. Please fill out the form below. All fields with a * are required. If you have any questions, please do not hesitate to contact WormBase at genenames@wormbase.org

should be changed into Micropublish allele-sequence data! Please fill out the form below. All fields with a * are required. If you have any questions, please do not hesitate to contact us at micropublications@wormbase.org


We should do the same thing we will do with allele phenotype form and have a different display:

  • Add ORCID field below 'Your Name' field
  • Remove PubMedID

Add -below 'Your e-mail address' field:

  • co-authors -> autocomplete on people
  • Laboratory -> autocomplete on labs -> mandatory
  • Funding -> free text -> mandatory
  • Species -> autocomplete on species?
  • Choose an image -> Browse button, only jpg accepted -> mandatory
  • Description -> big text (small box that becomes big upon clicking)

Move

 * Allele Name ?	
 * Gene Name 	
 * Sequence Name ?	

in a separate section called 'allele details'

Below the Comment field add (see http://www.wormbase.org/submissions/expr_micropub.cgi)

  • Publication Details
  • Title of the Submission
  • Suggested Reviewer
  • Comments
  • References -> Field that allows PMID entries
  • Disclaimer -> mandatory checkbox like in the Expression micropublication form: I declare to the best of my knowledge that the experiment is reproducible.


Mary Ann implemented (May 2017) the following changes in the general form:

  • Under the Sequence Data section.

Add Engineered_allele (after deletion + insertion) to Type of Alteration

  • Under the Origin section.

Add a new Field "Production Method" with "for engineered alleles" already entered the box if this is possible for a pull_down. If it's not possible then we need to add "for engineered alleles only" somewhere near that field.

Pull down should have

CRISPR_Cas9
Homologous_recombination
MosSci
MosDEL
NHEJ
TALENs
ZFNNHEJ_repair
ZFNNHEJ_repair

Ideal
Phenotype? -> supply button that submits allele data then shuttles user to modified phenotype form, that has been autopopulated with values already entered through this form