Difference between revisions of "AceOjbect Redesign Page"
From WormBaseWiki
Jump to navigationJump to search| Line 12: | Line 12: | ||
! Comment/Brief Description | ! Comment/Brief Description | ||
| Link | | Link | ||
| + | | Replaces | ||
|-bgcolor="#F6989D" | |-bgcolor="#F6989D" | ||
| 1 | | 1 | ||
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|No distinct API needed at this time; partner class of Gene and possibly Variation, Rearrangement, Locus | |No distinct API needed at this time; partner class of Gene and possibly Variation, Rearrangement, Locus | ||
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|No distinct API needed at this time; accessed through XREFed classes. | |No distinct API needed at this time; accessed through XREFed classes. | ||
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|No distinct API needed at this time; support class for Anatomy_term. | |No distinct API needed at this time; support class for Anatomy_term. | ||
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|No distinct API needed at this time. | |No distinct API needed at this time. | ||
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|Person class takes precendence. | |Person class takes precendence. | ||
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|-bgcolor="#F6989D" | |-bgcolor="#F6989D" | ||
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|No distinct API necessary at this time | |No distinct API necessary at this time | ||
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|-bgcolor="#F6989D" | |-bgcolor="#F6989D" | ||
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|No distinct API necessary at this time; support class of Gene and Sequence; accessed through XREFed classes. | |No distinct API necessary at this time; support class of Gene and Sequence; accessed through XREFed classes. | ||
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|No distinct API needed at this time; accessed from XREFed classes. | |No distinct API needed at this time; accessed from XREFed classes. | ||
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|-bgcolor="#F6989D" | |-bgcolor="#F6989D" | ||
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|No distinct API needed at this time; accessed from XREFed classes. | |No distinct API needed at this time; accessed from XREFed classes. | ||
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| will schedule a content/UI call soon | | will schedule a content/UI call soon | ||
| http://beta.wormbase.org/reports/gene/WBGene00006763 | | http://beta.wormbase.org/reports/gene/WBGene00006763 | ||
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| 27 | | 27 | ||
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|No distinct API needed at this time; support class for Gene. | |No distinct API needed at this time; support class for Gene. | ||
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|No distinct API necessary at this time. | |No distinct API necessary at this time. | ||
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|No API necessary; AceDB internals. | |No API necessary; AceDB internals. | ||
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|-bgcolor="#D7D7D7" | |-bgcolor="#D7D7D7" | ||
| Line 291: | Line 326: | ||
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|No API necessary; AceDB internals. | |No API necessary; AceDB internals. | ||
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|-bgcolor="#D7D7D7" | |-bgcolor="#D7D7D7" | ||
| Line 299: | Line 335: | ||
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|No API necessary; AceDB internals. | |No API necessary; AceDB internals. | ||
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|-bgcolor="#F6989D" | |-bgcolor="#F6989D" | ||
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|No API necessary at this time; accessed from XREFed classes. | |No API necessary at this time; accessed from XREFed classes. | ||
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| Norie | | Norie | ||
| ? | | ? | ||
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|-bgcolor="#D7D7D7" | |-bgcolor="#D7D7D7" | ||
| Line 331: | Line 371: | ||
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|No API necessary; AceDB internals. | |No API necessary; AceDB internals. | ||
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|- bgcolor="#D7D7D7" | |- bgcolor="#D7D7D7" | ||
| Line 339: | Line 380: | ||
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|No API necessary; AceDB internals. | |No API necessary; AceDB internals. | ||
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|-bgcolor="#F6989D" | |-bgcolor="#F6989D" | ||
| Line 347: | Line 389: | ||
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|No distinct API necessary at this time. | |No distinct API necessary at this time. | ||
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| Line 360: | Line 404: | ||
| [[WormBase Model:Library|Library]] | | [[WormBase Model:Library|Library]] | ||
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| [[WormBase Model:Locus|Locus]] | | [[WormBase Model:Locus|Locus]] | ||
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| Line 387: | Line 434: | ||
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|No API necessary; AceDB internals. | |No API necessary; AceDB internals. | ||
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|-bgcolor="#D7D7D7" | |-bgcolor="#D7D7D7" | ||
| Line 395: | Line 443: | ||
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|No API necessary; AceDB internals. | |No API necessary; AceDB internals. | ||
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|-bgcolor="#D7D7D7" | |-bgcolor="#D7D7D7" | ||
| Line 403: | Line 452: | ||
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|No API necessary; AceDB internals. | |No API necessary; AceDB internals. | ||
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|-bgcolor="#D7D7D7" | |-bgcolor="#D7D7D7" | ||
| Line 411: | Line 461: | ||
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|No API necessary; AceDB internals. | |No API necessary; AceDB internals. | ||
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|No distinct API needed at this time. | |No distinct API needed at this time. | ||
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| Line 475: | Line 533: | ||
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|No API necessary; AceDB internals. | |No API necessary; AceDB internals. | ||
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|-bgcolor="#D7D7D7" | |-bgcolor="#D7D7D7" | ||
| Line 483: | Line 542: | ||
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|No API necessary at this time; I don't think this class even exists. | |No API necessary at this time; I don't think this class even exists. | ||
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| Line 491: | Line 551: | ||
| Norie | | Norie | ||
| ? | | ? | ||
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|-bgcolor="#D7D7D7" | |-bgcolor="#D7D7D7" | ||
| Line 499: | Line 560: | ||
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|No API necessary; AceDB internals/accessed from XREFed classes. | |No API necessary; AceDB internals/accessed from XREFed classes. | ||
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|-bgcolor="#D7D7D7" | |-bgcolor="#D7D7D7" | ||
| Line 507: | Line 569: | ||
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|No API necessary; AceDB internals. | |No API necessary; AceDB internals. | ||
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|-bgcolor="#D7D7D7" | |-bgcolor="#D7D7D7" | ||
| Line 515: | Line 578: | ||
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|No API necessary; AceDB internals. | |No API necessary; AceDB internals. | ||
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|-bgcolor="#F6989D" | |-bgcolor="#F6989D" | ||
| Line 523: | Line 587: | ||
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|No API necessary at this time; accessed from XREFed classes. | |No API necessary at this time; accessed from XREFed classes. | ||
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| [[WormBase Model:Neurodata|Neurodata]] | | [[WormBase Model:Neurodata|Neurodata]] | ||
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| Line 536: | Line 602: | ||
| [[WormBase Model:Neuro_location|Neuro_location]] | | [[WormBase Model:Neuro_location|Neuro_location]] | ||
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| Line 547: | Line 614: | ||
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|No distinct API necessary at this time; accessed through XREFed classes like PCR_product. | |No distinct API necessary at this time; accessed through XREFed classes like PCR_product. | ||
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|-bgcolor="#F6989D" | |-bgcolor="#F6989D" | ||
| Line 555: | Line 623: | ||
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|No distinct API necessary at this time; accessed through XREFed classes. | |No distinct API necessary at this time; accessed through XREFed classes. | ||
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| ? | | ? | ||
| http://beta.wormbase.org/reports/paper/WBPaper00015392 | | http://beta.wormbase.org/reports/paper/WBPaper00015392 | ||
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| 71 | | 71 | ||
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| Norie | | Norie | ||
| ? | | ? | ||
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|-bgcolor="#F6989D" | |-bgcolor="#F6989D" | ||
| Line 595: | Line 668: | ||
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|No API needed at this time; support class for searching the Person class. | |No API needed at this time; support class for searching the Person class. | ||
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| Line 604: | Line 678: | ||
| will schedule a call soon | | will schedule a call soon | ||
| http://beta.wormbase.org/reports/phenotype/WBPhenotype:0000039 | | http://beta.wormbase.org/reports/phenotype/WBPhenotype:0000039 | ||
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|-bgcolor="#F6989D" | |-bgcolor="#F6989D" | ||
| 75 | | 75 | ||
| Line 611: | Line 686: | ||
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|No distinct API necessary at this time; support class of Phenotype; accessed through XREFed classes. | |No distinct API necessary at this time; support class of Phenotype; accessed through XREFed classes. | ||
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|-bgcolor="#F6989D" | |-bgcolor="#F6989D" | ||
| Line 619: | Line 695: | ||
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|No API needed at this time; support class for searching Phenotype. | |No API needed at this time; support class for searching Phenotype. | ||
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|-bgcolor="#D7D7D7" | |-bgcolor="#D7D7D7" | ||
| Line 627: | Line 704: | ||
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|No API needed; AceDB internals. | |No API needed; AceDB internals. | ||
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| Line 633: | Line 711: | ||
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|No distinct API needed at this time; accessed through XREFed classes. | |No distinct API needed at this time; accessed through XREFed classes. | ||
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| Line 652: | Line 732: | ||
| Content/UI call done on 07/08/10, rather simple model should be finish soon. | | Content/UI call done on 07/08/10, rather simple model should be finish soon. | ||
| http://beta.wormbase.org/reports/protein/WP:CE28239 | | http://beta.wormbase.org/reports/protein/WP:CE28239 | ||
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| 81 | | 81 | ||
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|No distinct API needed at this time. | |No distinct API needed at this time. | ||
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|No distinct API necessary at this time; this seems to be a helper class of Paper anyways. | |No distinct API necessary at this time; this seems to be a helper class of Paper anyways. | ||
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| Line 724: | Line 813: | ||
| Content/UI call on 07/10/10, lots of feedback | | Content/UI call on 07/10/10, lots of feedback | ||
| http://beta.wormbase.org/reports/sequence/JC8.10a | | http://beta.wormbase.org/reports/sequence/JC8.10a | ||
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| 90 | | 90 | ||
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|No API necessary; AceDB internals. | |No API necessary; AceDB internals. | ||
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| Norie | | Norie | ||
| ? | | ? | ||
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|No distinct API needed at this time; support class of Gene and Sequence; accessed through XREFed classes. | |No distinct API needed at this time; support class of Gene and Sequence; accessed through XREFed classes. | ||
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| Line 789: | Line 886: | ||
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| 98 | | 98 | ||
| [[WormBase Model:Transposon|Transposon]] | | [[WormBase Model:Transposon|Transposon]] | ||
| Line 794: | Line 892: | ||
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| Line 803: | Line 902: | ||
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|No distinct API necessary at this time; support class of Transposon & variation; accessed through XREFed classes. | |No distinct API necessary at this time; support class of Transposon & variation; accessed through XREFed classes. | ||
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| Line 812: | Line 912: | ||
| content/UI call finish on 06/25/10, will schedule another follow up call | | content/UI call finish on 06/25/10, will schedule another follow up call | ||
| http://beta.wormbase.org/reports/variation/WBVar00182432 | | http://beta.wormbase.org/reports/variation/WBVar00182432 | ||
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|-bgcolor="#F6989D" | |-bgcolor="#F6989D" | ||
| 101 | | 101 | ||
| Line 819: | Line 920: | ||
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|No API necessary at this time; support class for Variation. | |No API necessary at this time; support class for Variation. | ||
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Revision as of 22:21, 14 July 2010
The A - Z of Ace Model and Redesign Page
| No. | Name | API | Template | People | Comment/Brief Description | Link | Replaces | |
|---|---|---|---|---|---|---|---|---|
| 1 | 2_point_data | No distinct API needed at this time; partner class of Gene and possibly Variation, Rearrangement, Locus | ||||||
| 2 | 3d_data | |||||||
| 3 | Accession_number | No distinct API needed at this time; accessed through XREFed classes. | ||||||
| 4 | Analysis | |||||||
| 5 | Anatomy_function | |||||||
| 6 | Anatomy_name | No distinct API needed at this time; support class for Anatomy_term. | ||||||
| 7 | Anatomy_term | |||||||
| 8 | Antibody | |||||||
| 9 | AO_code | |||||||
| 10 | Atlas | No distinct API needed at this time. | ||||||
| 11 | Author | Person class takes precendence. | ||||||
| 12 | Balancer | No distinct API necessary at this time | ||||||
| 13 | CDS | No distinct API necessary at this time; support class of Gene and Sequence; accessed through XREFed classes. | ||||||
| 14 | Cell | |||||||
| 15 | Cell_group | |||||||
| 16 | Clone | |||||||
| 17 | Condition | |||||||
| 18 | Contig | |||||||
| 19 | Database | No distinct API needed at this time; accessed from XREFed classes. | ||||||
| 20 | Database_field | No distinct API needed at this time; accessed from XREFed classes. | ||||||
| 21 | Expression_cluster | |||||||
| 22 | Expr_pattern | |||||||
| 23 | Expr_profile | |||||||
| 24 | Feature | |||||||
| 25 | Feature_data | |||||||
| 26 | Gene | mostly done | in the progress | Norie and Abby | will schedule a content/UI call soon | http://beta.wormbase.org/reports/gene/WBGene00006763 | ||
| 27 | Gene_class | |||||||
| 28 | Gene_cluster | |||||||
| 29 | Gene_name | No distinct API needed at this time; support class for Gene. | ||||||
| 30 | Gene_regulation | |||||||
| 31 | Genetic_code | No distinct API necessary at this time. | ||||||
| 32 | GO_code | |||||||
| 33 | GO_term | |||||||
| 34 | Grid | No API necessary; AceDB internals. | ||||||
| 35 | Grid_data | No API necessary; AceDB internals. | ||||||
| 36 | Grid_row | No API necessary; AceDB internals. | ||||||
| 37 | Homol_data | No API necessary at this time; accessed from XREFed classes. | ||||||
| 38 | Homology_group | |||||||
| 39 | Interaction | 80%? | ? | Norie | ? | |||
| 40 | Interval_col_conf | No API necessary; AceDB internals. | ||||||
| 41 | Jade | No API necessary; AceDB internals. | ||||||
| 42 | Lab_Location | No distinct API necessary at this time. | ||||||
| 43 | Laboratory | |||||||
| 44 | Library | |||||||
| 45 | Life_stage | |||||||
| 46 | Locus | |||||||
| 47 | ManyMap | No API necessary; AceDB internals. | ||||||
| 48 | Map | No API necessary; AceDB internals. | ||||||
| 49 | Map_error | No API necessary; AceDB internals. | ||||||
| 50 | Map_offset | No API necessary; AceDB internals. | ||||||
| 51 | Map_position | |||||||
| 52 | Mass_spec_experiment | |||||||
| 53 | Mass_spec_peptide | |||||||
| 54 | Method | No distinct API needed at this time. | ||||||
| 55 | Microarray | |||||||
| 56 | Microarray_experiment | |||||||
| 57 | Microarray_results | |||||||
| 58 | Mixed_grid_row | No API necessary; AceDB internals. | ||||||
| 59 | Molecule | No API necessary at this time; I don't think this class even exists. | ||||||
| 60 | Motif | 80%? | ? | Norie | ? | |||
| 61 | Movie | No API necessary; AceDB internals/accessed from XREFed classes. | ||||||
| 62 | Multi_counts | No API necessary; AceDB internals. | ||||||
| 63 | MultiMap | No API necessary; AceDB internals. | ||||||
| 64 | Multi_pt_data | No API necessary at this time; accessed from XREFed classes. | ||||||
| 65 | Neurodata | |||||||
| 66 | Neuro_location | |||||||
| 67 | Oligo | No distinct API necessary at this time; accessed through XREFed classes like PCR_product. | ||||||
| 68 | Oligo_set | No distinct API necessary at this time; accessed through XREFed classes. | ||||||
| 69 | Operon | |||||||
| 70 | Paper | 50% | 50% | Xiaoqi | ? | http://beta.wormbase.org/reports/paper/WBPaper00015392 | ||
| 71 | PCR_product | |||||||
| 72 | Person | 80%? | ? | Norie | ? | |||
| 73 | Person_name | No API needed at this time; support class for searching the Person class. | ||||||
| 74 | Phenotype | 85% | 85% | Xiaoqi | will schedule a call soon | http://beta.wormbase.org/reports/phenotype/WBPhenotype:0000039 | ||
| 75 | Phenotype_Assay | No distinct API necessary at this time; support class of Phenotype; accessed through XREFed classes. | ||||||
| 76 | Phenotype_name | No API needed at this time; support class for searching Phenotype. | ||||||
| 77 | Picture | No API needed; AceDB internals. | ||||||
| 78 | Position_Matrix | |||||||
| 79 | Pos_neg_data | No distinct API needed at this time; accessed through XREFed classes. | ||||||
| 80 | Protein | 90% | 90% | Xiaoqi | Content/UI call done on 07/08/10, rather simple model should be finish soon. | http://beta.wormbase.org/reports/protein/WP:CE28239 | ||
| 81 | Pseudogene | |||||||
| 82 | Rearrangement | |||||||
| 83 | ReconCellInfo | No distinct API needed at this time. | ||||||
| 84 | Reconstruction | |||||||
| 85 | Reference | No distinct API necessary at this time; this seems to be a helper class of Paper anyways. | ||||||
| 86 | RNAi | |||||||
| 87 | SAGE_experiment | |||||||
| 88 | SAGE_tag | |||||||
| 89 | Sequence | 80% | 80% | Xiaoqi | Content/UI call on 07/10/10, lots of feedback | http://beta.wormbase.org/reports/sequence/JC8.10a | ||
| 90 | SK_map | |||||||
| 91 | SO_term | No API necessary; AceDB internals. | ||||||
| 92 | Species | |||||||
| 93 | Strain | 80%? | ? | Norie | ? | |||
| 94 | Structure_data | |||||||
| 95 | Timepoint | |||||||
| 96 | Transcript | No distinct API needed at this time; support class of Gene and Sequence; accessed through XREFed classes. | ||||||
| 97 | Transgene | 80%? | ? | Norie | ? | |||
| 98 | Transposon | |||||||
| 99 | Transposon_family | No distinct API necessary at this time; support class of Transposon & variation; accessed through XREFed classes. | ||||||
| 100 | Variation | 85% | 85% | Todd | content/UI call finish on 06/25/10, will schedule another follow up call | http://beta.wormbase.org/reports/variation/WBVar00182432 | ||
| 101 | Variation_name | No API necessary at this time; support class for Variation. | ||||||
| 102 | YH |
