Difference between revisions of "AceOjbect Redesign Page"

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m (Protected "AceOjbect Redesign Page": Deprecated by the Google Matrix ([edit=sysop] (indefinite) [move=sysop] (indefinite)))
 
(49 intermediate revisions by 5 users not shown)
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== The A - Z of Ace Model and Redesign Page ==
 
== The A - Z of Ace Model and Redesign Page ==
  
−
 
+
This page serves as an index of available Ace classses; see the [https://spreadsheets.google.com/a/wormbase.org/ccc?key=tygSYCz49YW5hyCcYMHUZ1Q#gid=2 Google Doc] for migration status.
  
 
{| border="1" class="wikitable"
 
{| border="1" class="wikitable"
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|-
 
|-
 
! No.
 
! No.
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! People  
 
! People  
 
! Comment/Brief Description
 
! Comment/Brief Description
−
|-
+
| Link
 +
| Replaces
 +
|-bgcolor="#F6989D"
 
| 1
 
| 1
 
|[[WormBase Model:2_point_data|2_point_data]]
 
|[[WormBase Model:2_point_data|2_point_data]]
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|  
 
|  
 
|
 
|
 +
|No API needed at this time; partner class of Gene and possibly Variation, Rearrangement, Locus
 
|
 
|
−
|-
+
|
 +
|-bgcolor="#D7D7D7"
 
| 2
 
| 2
 
| [[WormBase Model:3d_data|3d_data]]
 
| [[WormBase Model:3d_data|3d_data]]
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|  
 
|  
 
|
 
|
 +
|No API needed. I think this class has been superceded by Structure_data.
 
|
 
|
−
|-
+
|
 +
|-bgcolor="#F6989D"
 
| 3
 
| 3
 
|[[WormBase Model:Accession_number|Accession_number]]
 
|[[WormBase Model:Accession_number|Accession_number]]
 
|  
 
|  
 
|  
 
|  
 +
|
 +
|No API needed at this time; accessed through XREFed classes.
 
|
 
|
 
|
 
|
−
|-
+
|-bgcolor="#FFF79A"
 
| 4
 
| 4
 
| [[WormBase Model:Analysis|Analysis]]
 
| [[WormBase Model:Analysis|Analysis]]
 
|  
 
|  
 
|  
 
|  
 +
|
 +
|No API needed at this time; Should probably be incorporated into Evidence template display.
 
|
 
|
 
|
 
|
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|
 
|
 
|
 
|
−
|-
+
|
 +
|
 +
|-bgcolor="#F6989D"
 
| 6
 
| 6
 
| [[WormBase Model:Anatomy_name|Anatomy_name]]
 
| [[WormBase Model:Anatomy_name|Anatomy_name]]
 
|  
 
|  
 
|  
 
|  
 +
|
 +
|No API needed at this time; support class for Anatomy_term.
 
|
 
|
 
|
 
|
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| 7
 
| 7
 
| [[WormBase Model:Anatomy_term|Anatomy_term]]
 
| [[WormBase Model:Anatomy_term|Anatomy_term]]
 +
| 80%
 
|  
 
|  
−
|  
+
| Norie
 +
|
 
|
 
|
 
|
 
|
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| 8
 
| 8
 
| [[WormBase Model:Antibody|Antibody]]
 
| [[WormBase Model:Antibody|Antibody]]
 +
| Almost done, work with XS on references
 
|  
 
|  
−
|  
+
| Norie
 +
|
 
|
 
|
 
|
 
|
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|
 
|
 
|
 
|
−
|-
+
|
 +
|
 +
|-bgcolor="#F6989D"
 
| 10
 
| 10
 
| [[WormBase Model:Atlas|Atlas]]
 
| [[WormBase Model:Atlas|Atlas]]
 
|  
 
|  
 
|  
 
|  
 +
|
 +
|No API needed at this time.
 
|
 
|
 
|
 
|
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|  
 
|  
 
|
 
|
 +
|Person class takes precendence.
 
|
 
|
−
|-
+
|
 +
|-bgcolor="#F6989D"
 
| 12
 
| 12
 
| [[WormBase Model:Balancer|Balancer]]
 
| [[WormBase Model:Balancer|Balancer]]
 
|  
 
|  
 
|  
 
|  
 +
|
 +
|No API needed at this time
 
|
 
|
 
|
 
|
−
|-
+
|-bgcolor="#F6989D"
 
| 13
 
| 13
 
| [[WormBase Model:CDS|CDS]]
 
| [[WormBase Model:CDS|CDS]]
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|  
 
|  
 
|  
 
|  
 +
|No API needed at this time; support class of Gene and Sequence; accessed through XREFed classes.
 +
|
 
|
 
|
−
|-
+
|-bgcolor="#D7D7D7"
 
| 14
 
| 14
 
| [[WormBase Model:Cell|Cell]]
 
| [[WormBase Model:Cell|Cell]]
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|  
 
|  
 
|
 
|
 +
|No API needed at this time.  Class is deprecated and no longer maintained.
 
|
 
|
−
|-
+
|
 +
|-bgcolor="#D7D7D7"
 
| 15
 
| 15
 
| [[WormBase Model:Cell_group|Cell_group]]
 
| [[WormBase Model:Cell_group|Cell_group]]
 
|  
 
|  
 
|  
 
|  
 +
|
 +
|No API needed at this time. Class is deprecated and no longer maintained.
 
|
 
|
 
|
 
|
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|  
 
|  
 
|  
 
|  
 +
|
 +
|
 
|
 
|
 
|
 
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|  
 
|  
 
|  
 
|  
 +
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 +
|
 
|
 
|
 
|
 
|
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|
 
|
 
|
 
|
−
|-
+
|
 +
|
 +
|-bgcolor="#F6989D"
 
| 19
 
| 19
 
| [[WormBase Model:Database|Database]]
 
| [[WormBase Model:Database|Database]]
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|  
 
|  
 
|
 
|
 +
|No API needed at this time; accessed from XREFed classes.
 
|
 
|
−
|-
+
|
 +
|-bgcolor="#F6989D"
 
| 20
 
| 20
 
| [[WormBase Model:Database_field|Database_field]]
 
| [[WormBase Model:Database_field|Database_field]]
 
|  
 
|  
 
|  
 
|  
 +
|
 +
|No API needed at this time; accessed from XREFed classes.
 
|
 
|
 
|
 
|
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| 21
 
| 21
 
| [[WormBase Model:Expression_cluster|Expression_cluster]]
 
| [[WormBase Model:Expression_cluster|Expression_cluster]]
 +
| 5%
 
|  
 
|  
−
|  
+
| Abby
 +
| just getting search working
 
|
 
|
 
|
 
|
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|  
 
|  
 
|  
 
|  
 +
|
 +
|
 
|
 
|
 
|
 
|
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| 23
 
| 23
 
| [[WormBase Model:Expr_profile|Expr_profile]]
 
| [[WormBase Model:Expr_profile|Expr_profile]]
 +
| 90%
 
|  
 
|  
−
|  
+
| Norie
 +
| Work with Template czar to get other necessary data for details
 
|
 
|
 
|
 
|
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|  
 
|  
 
|   
 
|   
 +
|
 +
|
 
|
 
|
 
|-
 
|-
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|
 
|
 
|
 
|
−
|-
+
|
 +
|
 +
|-bgcolor="#82CA9D"
 
| 26
 
| 26
 
| [[WormBase Model:Gene|Gene]]
 
| [[WormBase Model:Gene|Gene]]
 
| mostly done
 
| mostly done
−
| in the progress
+
| in progress
 
| Norie and Abby
 
| Norie and Abby
 
| will schedule a content/UI call soon
 
| will schedule a content/UI call soon
 +
| http://beta.wormbase.org/reports/gene/WBGene00006763
 +
|
 
|-
 
|-
 
| 27
 
| 27
 
| [[WormBase Model:Gene_class|Gene_class]]
 
| [[WormBase Model:Gene_class|Gene_class]]
 +
| on going
 
|  
 
|  
−
|  
+
| Norie
−
|  
+
|
 +
|
 
|
 
|
 
|-
 
|-
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|
 
|
 
|
 
|
−
|-
+
|
 +
|
 +
|-bgcolor="#F6989D"
 
| 29
 
| 29
 
| [[WormBase Model:Gene_name|Gene_name]]
 
| [[WormBase Model:Gene_name|Gene_name]]
 
|  
 
|  
 
|  
 
|  
 +
|
 +
|No API needed at this time; support class for Gene.
 
|
 
|
 
|
 
|
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|
 
|
 
|
 
|
−
|-
+
|
 +
|
 +
|-bgcolor="#F6989D"
 
| 31
 
| 31
 
| [[WormBase Model:Genetic_code|Genetic_code]]
 
| [[WormBase Model:Genetic_code|Genetic_code]]
 
|  
 
|  
 
|
 
|
 +
|
 +
|No API needed at this time.
 
|
 
|
 
|
 
|
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|  
 
|  
 
|  
 
|  
 +
|
 +
|
 
|
 
|
 
|
 
|
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| 33
 
| 33
 
| [[WormBase Model:GO_term|GO_term]]
 
| [[WormBase Model:GO_term|GO_term]]
 +
| Mostly done
 
|  
 
|  
−
|  
+
| Norie
 +
|
 
|
 
|
 
|
 
|
−
|-
+
|-bgcolor="#D7D7D7"
 
| 34
 
| 34
 
| [[WormBase Model:Grid|Grid]]
 
| [[WormBase Model:Grid|Grid]]
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|  
 
|  
 
|
 
|
 +
|No API necessary; AceDB internals.
 
|
 
|
−
|-
+
|
 +
|-bgcolor="#D7D7D7"
 
| 35
 
| 35
 
| [[WormBase Model:Grid_data|Grid_data]]
 
| [[WormBase Model:Grid_data|Grid_data]]
 
|  
 
|  
 
|  
 
|  
 +
|
 +
|No API necessary; AceDB internals.
 
|
 
|
 
|
 
|
−
|-
+
|-bgcolor="#D7D7D7"
 
| 36
 
| 36
 
| [[WormBase Model:Grid_row|Grid_row]]
 
| [[WormBase Model:Grid_row|Grid_row]]
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|  
 
|  
 
|
 
|
 +
|No API necessary; AceDB internals.
 
|
 
|
−
|-
+
|
 +
|-bgcolor="#F6989D"
 
| 37
 
| 37
 
| [[WormBase Model:Homol_data|Homol_data]]
 
| [[WormBase Model:Homol_data|Homol_data]]
 
|  
 
|  
 
|
 
|
 +
|
 +
|No API needed at this time; accessed from XREFed classes.
 
|
 
|
 
|
 
|
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|  
 
|  
 
|  
 
|  
 +
|
 +
|
 
|
 
|
 
|
 
|
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| Norie
 
| Norie
 
| ?
 
| ?
−
|-
+
|
 +
|
 +
|-bgcolor="#D7D7D7"
 
| 40
 
| 40
 
| [[WormBase Model:Interval_col_conf|Interval_col_conf]]
 
| [[WormBase Model:Interval_col_conf|Interval_col_conf]]
 
|  
 
|  
 
|  
 
|  
 +
|
 +
|No API necessary; AceDB internals.
 
|
 
|
 
|
 
|
−
|-
+
|- bgcolor="#D7D7D7"
 
| 41
 
| 41
 
| [[WormBase Model:Jade|Jade]]
 
| [[WormBase Model:Jade|Jade]]
 
|  
 
|  
 
|  
 
|  
 +
|
 +
|No API necessary; AceDB internals.
 
|
 
|
 
|
 
|
−
|-
+
|-bgcolor="#F6989D"
 
| 42
 
| 42
 
| [[WormBase Model:Lab_Location|Lab_Location]]
 
| [[WormBase Model:Lab_Location|Lab_Location]]
 
|   
 
|   
 
|  
 
|  
 +
|
 +
|No API needed at this time.
 
|
 
|
 
|
 
|
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| 43
 
| 43
 
| [[WormBase Model:Laboratory|Laboratory]]
 
| [[WormBase Model:Laboratory|Laboratory]]
 +
| 90%
 
|  
 
|  
−
|  
+
| Norie
 +
|
 
|
 
|
 
|
 
|
Line 317: Line 404:
 
| [[WormBase Model:Library|Library]]
 
| [[WormBase Model:Library|Library]]
 
|  
 
|  
 +
|
 +
|
 
|
 
|
 
|
 
|
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|  
 
|  
 
|  
 
|  
 +
|
 +
|
 
|
 
|
 
|
 
|
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|
 
|
 
|
 
|
−
|-
+
|
 +
|
 +
|-bgcolor="#D7D7D7"
 
| 47
 
| 47
 
| [[WormBase Model:ManyMap|ManyMap]]
 
| [[WormBase Model:ManyMap|ManyMap]]
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|  
 
|  
 
|
 
|
 +
|No API necessary; AceDB internals.
 
|
 
|
−
|-
+
|
 +
|-bgcolor="#D7D7D7"
 
| 48
 
| 48
 
| [[WormBase Model:Map|Map]]
 
| [[WormBase Model:Map|Map]]
 
|  
 
|  
 
|  
 
|  
 +
|
 +
|No API necessary; AceDB internals.
 
|
 
|
 
|
 
|
−
|-
+
|-bgcolor="#D7D7D7"
 
| 49
 
| 49
 
| [[WormBase Model:Map_error|Map_error]]
 
| [[WormBase Model:Map_error|Map_error]]
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|  
 
|  
 
|
 
|
 +
|No API necessary; AceDB internals.
 
|
 
|
−
|-
+
|
 +
|-bgcolor="#D7D7D7"
 
| 50
 
| 50
 
| [[WormBase Model:Map_offset|Map_offset]]
 
| [[WormBase Model:Map_offset|Map_offset]]
 
|  
 
|  
 
|  
 
|  
 +
|
 +
|No API necessary; AceDB internals.
 
|
 
|
 
|
 
|
−
|-
+
|-bgcolor="#FFF79A"
 
| 51
 
| 51
 
| [[WormBase Model:Map_position|Map_position]]
 
| [[WormBase Model:Map_position|Map_position]]
 
|  
 
|  
 
|  
 
|  
 +
|
 +
|No API needed at this time; accessed through XREFed classes.
 
|
 
|
 
|
 
|
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|  
 
|  
 
|  
 
|  
 +
|
 +
|
 
|
 
|
 
|-
 
|-
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|  
 
|  
 
|
 
|
−
|-
+
|
 +
|
 +
|-bgcolor="#F6989D"
 
| 54
 
| 54
 
| [[WormBase Model:Method|Method]]
 
| [[WormBase Model:Method|Method]]
 
|  
 
|  
 
|  
 
|  
 +
|
 +
|No API needed at this time.
 
|
 
|
 
|
 
|
−
|-
+
|-bgcolor="#FFF79A"
 
| 55
 
| 55
 
| [[WormBase Model:Microarray|Microarray]]
 
| [[WormBase Model:Microarray|Microarray]]
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|  
 
|  
 
|
 
|
 +
|No API needed at this time; support class of Microarray_results; display being shunted to SPELL at Caltech.
 
|
 
|
−
|-
+
|
 +
|-bgcolor="#FFF79A"
 
| 56
 
| 56
 
| [[WormBase Model:Microarray_experiment|Microarray_experiment]]
 
| [[WormBase Model:Microarray_experiment|Microarray_experiment]]
 
|  
 
|  
 
|  
 
|  
 +
|
 +
|No API needed at this time; support class of Microarray_results; display being shunted to SPELL at Caltech.
 
|
 
|
 
|
 
|
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| 57
 
| 57
 
| [[WormBase Model:Microarray_results|Microarray_results]]
 
| [[WormBase Model:Microarray_results|Microarray_results]]
 +
| 5%
 
|  
 
|  
 +
| Abby
 +
| Just enabled search results display and searching by gene
 
|  
 
|  
 
|
 
|
−
|
+
|-bgcolor="#D7D7D7"
−
|-
 
 
| 58
 
| 58
 
| [[WormBase Model:Mixed_grid_row|Mixed_grid_row]]
 
| [[WormBase Model:Mixed_grid_row|Mixed_grid_row]]
 
|  
 
|  
 
|  
 
|  
 +
|
 +
|No API necessary; AceDB internals.
 
|
 
|
 
|
 
|
−
|-
+
|-bgcolor="#D7D7D7"
 
| 59
 
| 59
 
| [[WormBase Model:Molecule|Molecule]]
 
| [[WormBase Model:Molecule|Molecule]]
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|  
 
|  
 
|  
 
|  
 +
|No API needed at this time; I don't think this class even exists.
 +
|
 
|
 
|
 
|-
 
|-
Line 432: Line 551:
 
| Norie
 
| Norie
 
| ?
 
| ?
−
|-
+
|
 +
|
 +
|-bgcolor="#D7D7D7"
 
| 61
 
| 61
 
| [[WormBase Model:Movie|Movie]]
 
| [[WormBase Model:Movie|Movie]]
Line 438: Line 559:
 
|  
 
|  
 
|
 
|
 +
|No API necessary; AceDB internals/accessed from XREFed classes.
 
|
 
|
−
|-
+
|
 +
|-bgcolor="#D7D7D7"
 
| 62
 
| 62
 
| [[WormBase Model:Multi_counts|Multi_counts]]
 
| [[WormBase Model:Multi_counts|Multi_counts]]
 
|  
 
|  
 
|  
 
|  
 +
|
 +
|No API necessary; AceDB internals.
 
|
 
|
 
|
 
|
−
|-
+
|-bgcolor="#D7D7D7"
 
| 63
 
| 63
 
| [[WormBase Model:MultiMap|MultiMap]]
 
| [[WormBase Model:MultiMap|MultiMap]]
Line 452: Line 577:
 
|  
 
|  
 
|
 
|
 +
|No API necessary; AceDB internals.
 
|
 
|
−
|-
+
|
 +
|-bgcolor="#F6989D"
 
| 64
 
| 64
 
| [[WormBase Model:Multi_pt_data|Multi_pt_data]]
 
| [[WormBase Model:Multi_pt_data|Multi_pt_data]]
 
|  
 
|  
 
|  
 
|  
 +
|
 +
|No API needed at this time; accessed from XREFed classes.
 
|
 
|
 
|
 
|
−
|-
+
|-bgcolor="#FFF79A"
 
| 65
 
| 65
 
| [[WormBase Model:Neurodata|Neurodata]]
 
| [[WormBase Model:Neurodata|Neurodata]]
 
|  
 
|  
 
|
 
|
 +
|
 +
|No API needed at this time. Is this class deprecated?
 
|
 
|
 
|
 
|
−
|-
+
|-bgcolor="#FFF79A"
 
| 66
 
| 66
 
| [[WormBase Model:Neuro_location|Neuro_location]]
 
| [[WormBase Model:Neuro_location|Neuro_location]]
Line 473: Line 604:
 
|
 
|
 
|
 
|
 +
|No API needed at this time. Is this class deprecated?
 
|
 
|
−
|-
+
|
 +
|-bgcolor="#F6989D"
 
| 67
 
| 67
 
| [[WormBase Model:Oligo|Oligo]]
 
| [[WormBase Model:Oligo|Oligo]]
 
|  
 
|  
 
|  
 
|  
 +
|
 +
|No API needed at this time; accessed through XREFed classes like PCR_product.
 
|
 
|
 
|
 
|
−
|-
+
|-bgcolor="#F6989D"
 
| 68
 
| 68
 
| [[WormBase Model:Oligo_set|Oligo_set]]
 
| [[WormBase Model:Oligo_set|Oligo_set]]
 
|  
 
|  
 
|  
 
|  
 +
|
 +
|No API needed at this time; accessed through XREFed classes.
 
|
 
|
 
|
 
|
Line 491: Line 628:
 
| 69
 
| 69
 
| [[WormBase Model:Operon|Operon]]
 
| [[WormBase Model:Operon|Operon]]
−
|  
+
| 90 %
 +
|
 +
| Norie
 +
| Work with XS on data needed for image
 
|
 
|
−
|
 
 
|
 
|
 
|-
 
|-
 
| 70
 
| 70
 
| [[WormBase Model:Paper|Paper]]
 
| [[WormBase Model:Paper|Paper]]
−
|  
+
| 50%
−
|  
+
| 50%
−
|
+
| Xiaoqi
 +
| ?
 +
| http://beta.wormbase.org/reports/paper/WBPaper00015392
 
|
 
|
 
|-
 
|-
Line 507: Line 648:
 
|  
 
|  
 
|  
 
|  
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 516: Line 659:
 
| Norie
 
| Norie
 
| ?
 
| ?
−
|-
+
|
 +
|
 +
|-bgcolor="#F6989D"
 
| 73
 
| 73
 
| [[WormBase Model:Person_name|Person_name]]
 
| [[WormBase Model:Person_name|Person_name]]
 
|  
 
|  
 
|  
 
|  
 +
|
 +
|No API needed at this time; support class for searching the Person class.
 
|
 
|
 
|
 
|
Line 530: Line 677:
 
| Xiaoqi
 
| Xiaoqi
 
| will schedule a call soon
 
| will schedule a call soon
−
|-
+
| http://beta.wormbase.org/reports/phenotype/WBPhenotype:0000039
 +
|
 +
|-bgcolor="#F6989D"
 
| 75
 
| 75
 
| [[WormBase Model:Phenotype_Assay|Phenotype_Assay]]
 
| [[WormBase Model:Phenotype_Assay|Phenotype_Assay]]
 
|  
 
|  
 
|  
 
|  
 +
|
 +
|No API needed at this time; support class of Phenotype; accessed through XREFed classes.
 
|
 
|
 
|
 
|
−
|-
+
|-bgcolor="#F6989D"
 
| 76
 
| 76
 
| [[WormBase Model:Phenotype_name|Phenotype_name]]
 
| [[WormBase Model:Phenotype_name|Phenotype_name]]
 
|  
 
|  
 
|  
 
|  
 +
|
 +
|No API needed at this time; support class for searching Phenotype.
 
|
 
|
 
|
 
|
−
|-
+
|-bgcolor="#D7D7D7"
 
| 77
 
| 77
 
| [[WormBase Model:Picture|Picture]]
 
| [[WormBase Model:Picture|Picture]]
 
|  
 
|  
 
|  
 
|  
 +
|
 +
|No API needed; AceDB internals.
 
|
 
|
 
|
 
|
Line 558: Line 713:
 
|
 
|
 
|
 
|
−
|-
+
|
 +
|
 +
|-bgcolor="#F6989D"
 
| 79
 
| 79
 
| [[WormBase Model:Pos_neg_data|Pos_neg_data]]
 
| [[WormBase Model:Pos_neg_data|Pos_neg_data]]
 
|  
 
|  
 
|  
 
|  
 +
|
 +
|No API needed at this time; accessed through XREFed classes.
 
|
 
|
 
|
 
|
Line 572: Line 731:
 
| Xiaoqi
 
| Xiaoqi
 
| Content/UI call done on 07/08/10, rather simple model should be finish soon.
 
| Content/UI call done on 07/08/10, rather simple model should be finish soon.
−
|-
+
| http://beta.wormbase.org/reports/protein/WP:CE28239
 +
|
 +
|-bgcolor="#FFF79A"
 
| 81
 
| 81
 
| [[WormBase Model:Pseudogene|Pseudogene]]
 
| [[WormBase Model:Pseudogene|Pseudogene]]
Line 578: Line 739:
 
|   
 
|   
 
|
 
|
 +
|No API needed at this time; support class of Gene; *possibly* needed for future enhancements.
 
|
 
|
−
|-
+
|
 +
|-bgcolor="#FFF79A"
 
| 82
 
| 82
 
| [[WormBase Model:Rearrangement|Rearrangement]]
 
| [[WormBase Model:Rearrangement|Rearrangement]]
Line 585: Line 748:
 
|  
 
|  
 
|
 
|
 +
|No API needed at this time; support class of Variation. *POSSIBLY* needed for future enhancements.
 
|
 
|
−
|-
+
|
 +
|-bgcolor="#FFF79A"
 
| 83
 
| 83
 
| [[WormBase Model:ReconCellInfo|ReconCellInfo]]
 
| [[WormBase Model:ReconCellInfo|ReconCellInfo]]
Line 592: Line 757:
 
|  
 
|  
 
|
 
|
 +
|No API needed at this time.
 
|
 
|
−
|-
+
|
 +
|-bgcolor="#FFF79A"
 
| 84
 
| 84
 
| [[WormBase Model:Reconstruction|Reconstruction]]
 
| [[WormBase Model:Reconstruction|Reconstruction]]
 
|  
 
|  
 
|  
 
|  
 +
|
 +
|No API needed at this time. Ask Raymond about this class.
 
|
 
|
 
|
 
|
−
|-
+
|-bgcolor="#F6989D"
 
| 85
 
| 85
 
| [[WormBase Model:Reference|Reference]]
 
| [[WormBase Model:Reference|Reference]]
 
|  
 
|  
 
|  
 
|  
 +
|
 +
|No API needed at this time; this seems to be a helper class of Paper anyways.
 
|
 
|
 
|
 
|
Line 610: Line 781:
 
| 86
 
| 86
 
| [[WormBase Model:RNAi|RNAi]]
 
| [[WormBase Model:RNAi|RNAi]]
−
|  
+
| 80%
 
|   
 
|   
−
|  
+
| Norie
 +
| Work with XS on references
 +
|
 
|
 
|
−
|-
+
|-bgcolor="#F6989D"
 
| 87
 
| 87
 
| [[WormBase Model:SAGE_experiment|SAGE_experiment]]
 
| [[WormBase Model:SAGE_experiment|SAGE_experiment]]
 
|  
 
|  
 
|  
 
|  
 +
|
 +
|No API needed at this time. Support class of Sage_tag.
 
|
 
|
 
|
 
|
Line 626: Line 801:
 
|  
 
|  
 
|  
 
|  
 +
|
 +
|
 
|
 
|
 
|
 
|
Line 635: Line 812:
 
| Xiaoqi
 
| Xiaoqi
 
| Content/UI call on 07/10/10, lots of feedback
 
| Content/UI call on 07/10/10, lots of feedback
 +
| http://beta.wormbase.org/reports/sequence/JC8.10a
 +
|
 
|-
 
|-
 
| 90
 
| 90
Line 642: Line 821:
 
|
 
|
 
|
 
|
−
|-
+
|
 +
|
 +
|-bgcolor="#D7D7D7"
 
| 91
 
| 91
 
| [[WormBase Model:SO_term|SO_term]]
 
| [[WormBase Model:SO_term|SO_term]]
Line 648: Line 829:
 
|  
 
|  
 
|
 
|
 +
|No API necessary; AceDB internals.
 
|
 
|
−
|-
+
|
 +
|-bgcolor="#F6989D"
 
| 92
 
| 92
 
| [[WormBase Model:Species|Species]]
 
| [[WormBase Model:Species|Species]]
 
|  
 
|  
 
|  
 
|  
 +
|
 +
|No API needed at this time. We will link Taxonomy to a (likely hand-coded) page describing that species and available resources.
 
|
 
|
 
|
 
|
Line 663: Line 848:
 
| Norie
 
| Norie
 
| ?
 
| ?
 +
|
 +
|
 
|-
 
|-
 
| 94
 
| 94
Line 670: Line 857:
 
|
 
|
 
|
 
|
−
|-
+
|
 +
|
 +
|-bgcolor="#F6989D"
 
| 95
 
| 95
 
| [[WormBase Model:Timepoint|Timepoint]]
 
| [[WormBase Model:Timepoint|Timepoint]]
Line 676: Line 865:
 
|  
 
|  
 
|
 
|
 +
|No API needed at this time.
 
|
 
|
−
|-
+
|
 +
|-bgcolor="#F6989D"
 
| 96
 
| 96
 
| [[WormBase Model:Transcript|Transcript]]
 
| [[WormBase Model:Transcript|Transcript]]
 
|  
 
|  
 
|   
 
|   
 +
|
 +
|No API needed at this time; support class of Gene and Sequence; accessed through XREFed classes.
 
|
 
|
 
|
 
|
Line 691: Line 884:
 
| Norie
 
| Norie
 
| ?
 
| ?
−
|-
+
|
 +
|
 +
|-bgcolor="#F6989D"
 
| 98
 
| 98
 
| [[WormBase Model:Transposon|Transposon]]
 
| [[WormBase Model:Transposon|Transposon]]
Line 697: Line 892:
 
|   
 
|   
 
|  
 
|  
 +
|No API needed at this time; support class of Transposon and Variation; accessed through XREFed classes.
 
|
 
|
−
|-
+
|
 +
|-bgcolor="#F6989D"
 
| 99
 
| 99
 
| [[WormBase Model:Transposon_family|Transposon_family]]
 
| [[WormBase Model:Transposon_family|Transposon_family]]
Line 704: Line 901:
 
|   
 
|   
 
|  
 
|  
 +
|No API needed at this time; support class of Transposon & variation; accessed through XREFed classes.
 +
|
 
|
 
|
 
|-
 
|-
Line 712: Line 911:
 
| Todd
 
| Todd
 
| content/UI call finish on 06/25/10, will schedule another follow up call
 
| content/UI call finish on 06/25/10, will schedule another follow up call
−
|-
+
| http://beta.wormbase.org/reports/variation/WBVar00182432
 +
|
 +
|-bgcolor="#F6989D"
 
| 101
 
| 101
 
| [[WormBase Model:Variation_name|Variation_name]]
 
| [[WormBase Model:Variation_name|Variation_name]]
 
|  
 
|  
 
|  
 
|  
 +
|
 +
|No API needed at this time; support class for Variation.
 
|
 
|
 
|
 
|
Line 726: Line 929:
 
|
 
|
 
|}
 
|}
 +
 +
 +
[[Category:Developer documentation]]
 +
[[Category:WormBase 2.0]]

Latest revision as of 18:14, 15 June 2011

The A - Z of Ace Model and Redesign Page

This page serves as an index of available Ace classses; see the Google Doc for migration status.

No. Name API Template People Comment/Brief Description Link Replaces
1 2_point_data No API needed at this time; partner class of Gene and possibly Variation, Rearrangement, Locus
2 3d_data No API needed. I think this class has been superceded by Structure_data.
3 Accession_number No API needed at this time; accessed through XREFed classes.
4 Analysis No API needed at this time; Should probably be incorporated into Evidence template display.
5 Anatomy_function
6 Anatomy_name No API needed at this time; support class for Anatomy_term.
7 Anatomy_term 80% Norie
8 Antibody Almost done, work with XS on references Norie
9 AO_code
10 Atlas No API needed at this time.
11 Author Person class takes precendence.
12 Balancer No API needed at this time
13 CDS No API needed at this time; support class of Gene and Sequence; accessed through XREFed classes.
14 Cell No API needed at this time. Class is deprecated and no longer maintained.
15 Cell_group No API needed at this time. Class is deprecated and no longer maintained.
16 Clone
17 Condition
18 Contig
19 Database No API needed at this time; accessed from XREFed classes.
20 Database_field No API needed at this time; accessed from XREFed classes.
21 Expression_cluster 5% Abby just getting search working
22 Expr_pattern
23 Expr_profile 90% Norie Work with Template czar to get other necessary data for details
24 Feature
25 Feature_data
26 Gene mostly done in progress Norie and Abby will schedule a content/UI call soon http://beta.wormbase.org/reports/gene/WBGene00006763
27 Gene_class on going Norie
28 Gene_cluster
29 Gene_name No API needed at this time; support class for Gene.
30 Gene_regulation
31 Genetic_code No API needed at this time.
32 GO_code
33 GO_term Mostly done Norie
34 Grid No API necessary; AceDB internals.
35 Grid_data No API necessary; AceDB internals.
36 Grid_row No API necessary; AceDB internals.
37 Homol_data No API needed at this time; accessed from XREFed classes.
38 Homology_group
39 Interaction 80%? ? Norie ?
40 Interval_col_conf No API necessary; AceDB internals.
41 Jade No API necessary; AceDB internals.
42 Lab_Location No API needed at this time.
43 Laboratory 90% Norie
44 Library
45 Life_stage
46 Locus
47 ManyMap No API necessary; AceDB internals.
48 Map No API necessary; AceDB internals.
49 Map_error No API necessary; AceDB internals.
50 Map_offset No API necessary; AceDB internals.
51 Map_position No API needed at this time; accessed through XREFed classes.
52 Mass_spec_experiment
53 Mass_spec_peptide
54 Method No API needed at this time.
55 Microarray No API needed at this time; support class of Microarray_results; display being shunted to SPELL at Caltech.
56 Microarray_experiment No API needed at this time; support class of Microarray_results; display being shunted to SPELL at Caltech.
57 Microarray_results 5% Abby Just enabled search results display and searching by gene
58 Mixed_grid_row No API necessary; AceDB internals.
59 Molecule No API needed at this time; I don't think this class even exists.
60 Motif 80%? ? Norie ?
61 Movie No API necessary; AceDB internals/accessed from XREFed classes.
62 Multi_counts No API necessary; AceDB internals.
63 MultiMap No API necessary; AceDB internals.
64 Multi_pt_data No API needed at this time; accessed from XREFed classes.
65 Neurodata No API needed at this time. Is this class deprecated?
66 Neuro_location No API needed at this time. Is this class deprecated?
67 Oligo No API needed at this time; accessed through XREFed classes like PCR_product.
68 Oligo_set No API needed at this time; accessed through XREFed classes.
69 Operon 90 % Norie Work with XS on data needed for image
70 Paper 50% 50% Xiaoqi ? http://beta.wormbase.org/reports/paper/WBPaper00015392
71 PCR_product
72 Person 80%? ? Norie ?
73 Person_name No API needed at this time; support class for searching the Person class.
74 Phenotype 85% 85% Xiaoqi will schedule a call soon http://beta.wormbase.org/reports/phenotype/WBPhenotype:0000039
75 Phenotype_Assay No API needed at this time; support class of Phenotype; accessed through XREFed classes.
76 Phenotype_name No API needed at this time; support class for searching Phenotype.
77 Picture No API needed; AceDB internals.
78 Position_Matrix
79 Pos_neg_data No API needed at this time; accessed through XREFed classes.
80 Protein 90% 90% Xiaoqi Content/UI call done on 07/08/10, rather simple model should be finish soon. http://beta.wormbase.org/reports/protein/WP:CE28239
81 Pseudogene No API needed at this time; support class of Gene; *possibly* needed for future enhancements.
82 Rearrangement No API needed at this time; support class of Variation. *POSSIBLY* needed for future enhancements.
83 ReconCellInfo No API needed at this time.
84 Reconstruction No API needed at this time. Ask Raymond about this class.
85 Reference No API needed at this time; this seems to be a helper class of Paper anyways.
86 RNAi 80% Norie Work with XS on references
87 SAGE_experiment No API needed at this time. Support class of Sage_tag.
88 SAGE_tag
89 Sequence 80% 80% Xiaoqi Content/UI call on 07/10/10, lots of feedback http://beta.wormbase.org/reports/sequence/JC8.10a
90 SK_map
91 SO_term No API necessary; AceDB internals.
92 Species No API needed at this time. We will link Taxonomy to a (likely hand-coded) page describing that species and available resources.
93 Strain 80%? ? Norie ?
94 Structure_data
95 Timepoint No API needed at this time.
96 Transcript No API needed at this time; support class of Gene and Sequence; accessed through XREFed classes.
97 Transgene 80%? ? Norie ?
98 Transposon No API needed at this time; support class of Transposon and Variation; accessed through XREFed classes.
99 Transposon_family No API needed at this time; support class of Transposon & variation; accessed through XREFed classes.
100 Variation 85% 85% Todd content/UI call finish on 06/25/10, will schedule another follow up call http://beta.wormbase.org/reports/variation/WBVar00182432
101 Variation_name No API needed at this time; support class for Variation.
102 YH
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