Difference between revisions of "2018 Advisory Board Meeting"
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= Project meeting = | = Project meeting = | ||
− | == Agenda == | + | == Agenda (tentative) == |
+ | |||
+ | * 0900: ''Coffee'' | ||
+ | * 0930: Lightning talks 1 | ||
+ | * 1045: ''Break'' | ||
+ | * 1100: Lightning talks 2 | ||
+ | * 1215: ''Lunch'' | ||
+ | * 1330: Lightning talks 3 | ||
+ | * 1445: ''Break'' | ||
+ | * 1500: Discussion session | ||
+ | * 1700 (or whenever): ''Close'' | ||
=== Lightning talks === | === Lightning talks === | ||
− | --5 minutes pe peson with 5 | + | --5 minutes pe peson with 5 minutes discussion |
− | 10 x | + | 10 x 20 = ~3.5 hours |
− | * Paul Davis - ''CGC, Variants and Strains'' | + | * Paul Davis -- ''CGC, Variants and Strains'' |
− | * Kevin Howe - | + | * Kevin Howe -- |
− | * Michael Paulini - ''Parasitic core species'' or ''WormBase@UCSC'' | + | * Michael Paulini -- ''Parasitic core species'' or ''WormBase@UCSC'' |
− | * Faye Rodgers - ''Community annotation of gene structures'' | + | * Faye Rodgers -- ''Community annotation of gene structures'' |
− | * Matt Russell - ''Using Datomic for curation data capture (Name server project)'' | + | * Matt Russell -- ''Using Datomic for curation data capture (Name server project)'' |
− | * Gary Williams - ''Gene curation; evidence for gene structures; tools for curation'' | + | * Gary Williams -- ''Gene curation; evidence for gene structures; tools for curation'' |
− | * Chris Grove - ''Phenotype curation & community phenotype curation, interactions (genetic & physical)'' | + | * Chris Grove -- ''Phenotype curation & community phenotype curation, interactions (genetic & physical)'' |
− | * Kimberly Van Auken - ''gene function annotation using GO'' | + | * Kimberly Van Auken -- ''gene function annotation using GO'' |
* Raymond Lee | * Raymond Lee | ||
− | * Karen Yook | + | * Karen Yook -- ''making more use of microPublication'' |
* Wen Chen | * Wen Chen | ||
* April Jauhal -- ''Gene regulation interactions'' | * April Jauhal -- ''Gene regulation interactions'' | ||
− | * Ranjana Kishore - ''Automated gene descriptions and disease models'' | + | * Ranjana Kishore -- ''Automated gene descriptions and disease models'' |
* Juancarlos Chan | * Juancarlos Chan | ||
− | * Paul Sternberg - ''Transcriptional Regulation, what we need to do'' | + | * Paul Sternberg -- ''Transcriptional Regulation, what we need to do'' |
* Todd Harris -- ''website status; use and users; associated costs and management; third party projects we support'' | * Todd Harris -- ''website status; use and users; associated costs and management; third party projects we support'' | ||
* Adam Wright | * Adam Wright |
Revision as of 10:38, 25 June 2018
The 2018 edition of the WormBase project meeting / Scientific Advisory Board meeting will take place at OICR on 12/13 July 2018.
Contents
Logistics
Attending
- Hinxton
- Matt Berriman, Kevin Howe, Michael Paulini, Paul Davis, Gary Williams, Matt Russell, Faye Rodgers
- Caltech
- Chris Grove, Kimberly Van Auken, Raymond Lee, Karen Yook, Paul Sternberg, Wen Chen, April Jauhal, Ranjana Kishore, Juancarlos Chan
- OICR
- Lincoln Stein, Todd Harris, Adam Wright, Paulo Nuin, Sibyl Gao
Presentation slides, drafts, etc
- https://drive.google.com/drive/folders/161gEkCTxIAy22iVm1gRWmhYu_yhavMf6
- Login with WormBase account to edit.
Project meeting
Agenda (tentative)
- 0900: Coffee
- 0930: Lightning talks 1
- 1045: Break
- 1100: Lightning talks 2
- 1215: Lunch
- 1330: Lightning talks 3
- 1445: Break
- 1500: Discussion session
- 1700 (or whenever): Close
Lightning talks
--5 minutes pe peson with 5 minutes discussion 10 x 20 = ~3.5 hours
- Paul Davis -- CGC, Variants and Strains
- Kevin Howe --
- Michael Paulini -- Parasitic core species or WormBase@UCSC
- Faye Rodgers -- Community annotation of gene structures
- Matt Russell -- Using Datomic for curation data capture (Name server project)
- Gary Williams -- Gene curation; evidence for gene structures; tools for curation
- Chris Grove -- Phenotype curation & community phenotype curation, interactions (genetic & physical)
- Kimberly Van Auken -- gene function annotation using GO
- Raymond Lee
- Karen Yook -- making more use of microPublication
- Wen Chen
- April Jauhal -- Gene regulation interactions
- Ranjana Kishore -- Automated gene descriptions and disease models
- Juancarlos Chan
- Paul Sternberg -- Transcriptional Regulation, what we need to do
- Todd Harris -- website status; use and users; associated costs and management; third party projects we support
- Adam Wright
- Paulo Nuin
- Sibyl Gao -- Technology stack modernization for UI and search, Name server UI
Discussion session
- Database migration project
- Datomic migration status
- How can we dove-talking with the Alliance infrastructure work?
- Plans for using Datomic in curation(?)
- What processes/tools should we centralise in the Alliance?
- Curation tools?
- WormMine?
Thursday dinner for staff and SAB member
Evening, Thursday July 12
SAB
Advisors
attending
- Valerie Wood - PomBase
- Mary Shimoyama - RGD
- Ann Rougvie
- Brian Oliver
- Gary Bader
- Brent Derry
- Mei Zhen
regrets
- Oliver Hobert
- Julie Ahringer
- Andrew Chisholm
- Mike Cherry
- John Calarco
Agenda
0800 coffee???
0830 introduction and overview -Paul Sternberg
Overview of Project, Funding, The Alliance, Big Picture, Issues, Outreach,
0900 dataflow and backend: status and plans -Kevin Howe
Status
0945 curation: status and plans -Chris Grove
Prioritization of datatypes How this is impacted by Alliance
1030 break
1100 website: status and plans - Todd Harris
DevOps Tools Running on datomic
1130 tools and displays;status and plans
WormMine - Ontology Browsing -Raymond ParaSite - Kevin Howe
1200 lunch
1300 SAB discussion
1430 Feedback, and Discussion
1630 conclude
Dinner for those who are not departing immediately
Evening, Friday, July 13