Difference between revisions of "2018 Advisory Board Meeting"

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== Agenda ==
 
== Agenda ==
  
Short talks from Everyone
+
=== Lightning talks ===
 +
 
 
--5 minutes pe peson with 5 mintues discussion
 
--5 minutes pe peson with 5 mintues discussion
 
10 x 24 = 4 hours
 
10 x 24 = 4 hours
 
+
It would be a good idea if wrote down below the general theme of what we will each be talking about, so that we can group the talks into themes. This might fall-out as per-site groupings, but some things (e.g. back-end migration) are cross-site and would benefit from being grouped together.
+
* Paul Davis - ''CGC, Variants and Strains''
 
+
* Kevin Howe -
* Kevin Howe
+
* Michael Paulini - ''Parasitic core species'' or ''WormBase@UCSC''
* Michael Paulini - ''parasitic core species'' or ''WormBase@UCSC''
+
* Faye Rodgers - ''Community annotation of gene structures''
* Paul Davis - CGC, Variants and Strains
+
* Matt Russell - ''Using Datomic for curation data capture (Name server project)''
 
* Gary Williams - ''Gene curation; evidence for gene structures; tools for curation''
 
* Gary Williams - ''Gene curation; evidence for gene structures; tools for curation''
* Matt Russell
+
* Chris Grove - ''Phenotype curation & community phenotype curation, interactions (genetic & physical)''
* Faye Rodgers
+
* Kimberly Van Auken - ''gene function annotation using GO''
 
 
* Chris Grove - phenotype curation & community phenotype curation, interactions (genetic & physical)
 
* Kimberly Van Auken - gene function annotation using GO
 
 
* Raymond Lee
 
* Raymond Lee
* Karen Yook  ''??making more use of microPublication??''
+
* Karen Yook  ''making more use of microPublication''
 
* Wen Chen
 
* Wen Chen
* April Jauhal -- gene regulation interactions
+
* April Jauhal -- ''Gene regulation interactions''
* Ranjana Kishore - Automated gene descriptions and disease models
+
* Ranjana Kishore - ''Automated gene descriptions and disease models''
 
* Juancarlos Chan
 
* Juancarlos Chan
 
• Paul Sternberg  ''Transcriptional Regulation, what we need to do''
 
• Paul Sternberg  ''Transcriptional Regulation, what we need to do''
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* Adam Wright
 
* Adam Wright
 
* Paulo Nuin
 
* Paulo Nuin
* Sibyl Gao -- Technology stack modernization for UI and search, Name server UI
+
* Sibyl Gao -- ''Technology stack modernization for UI and search, Name server UI''
 +
 
 +
=== Discussion session ===
 +
 
 +
* Database migration project
 +
** Datomic migration status
 +
** How can we dove-talking with the Alliance infrastructure work?
 +
** Plans for using Datomic in curation(?)
  
topics
+
* What processes/tools should we centralise in the Alliance?
Backend: datomic migration, curation, Alliance plans
+
** Curation tools?
 +
** WormMine?
  
WormMine etc.
 
  
 
= Thursday dinner for staff and SAB member =
 
= Thursday dinner for staff and SAB member =

Revision as of 10:30, 25 June 2018

The 2018 edition of the WormBase project meeting / Scientific Advisory Board meeting will take place at OICR on 12/13 July 2018.

Logistics

Attending

  • Hinxton
    • Matt Berriman, Kevin Howe, Michael Paulini, Paul Davis, Gary Williams, Matt Russell, Faye Rodgers
  • Caltech
    • Chris Grove, Kimberly Van Auken, Raymond Lee, Karen Yook, Paul Sternberg, Wen Chen, April Jauhal, Ranjana Kishore, Juancarlos Chan
  • OICR
    • Lincoln Stein, Todd Harris, Adam Wright, Paulo Nuin, Sibyl Gao

Presentation slides, drafts, etc

Project meeting

Agenda

Lightning talks

--5 minutes pe peson with 5 mintues discussion 10 x 24 = 4 hours

  • Paul Davis - CGC, Variants and Strains
  • Kevin Howe -
  • Michael Paulini - Parasitic core species or WormBase@UCSC
  • Faye Rodgers - Community annotation of gene structures
  • Matt Russell - Using Datomic for curation data capture (Name server project)
  • Gary Williams - Gene curation; evidence for gene structures; tools for curation
  • Chris Grove - Phenotype curation & community phenotype curation, interactions (genetic & physical)
  • Kimberly Van Auken - gene function annotation using GO
  • Raymond Lee
  • Karen Yook making more use of microPublication
  • Wen Chen
  • April Jauhal -- Gene regulation interactions
  • Ranjana Kishore - Automated gene descriptions and disease models
  • Juancarlos Chan

• Paul Sternberg Transcriptional Regulation, what we need to do

  • Todd Harris -- website status; use and users; associated costs and management; third party projects we support
  • Adam Wright
  • Paulo Nuin
  • Sibyl Gao -- Technology stack modernization for UI and search, Name server UI

Discussion session

  • Database migration project
    • Datomic migration status
    • How can we dove-talking with the Alliance infrastructure work?
    • Plans for using Datomic in curation(?)
  • What processes/tools should we centralise in the Alliance?
    • Curation tools?
    • WormMine?


Thursday dinner for staff and SAB member

Evening, Thursday July 12

SAB

Advisors

attending

regrets

  • Oliver Hobert
  • Julie Ahringer
  • Andrew Chisholm
  • Mike Cherry
  • John Calarco

Agenda

0800 coffee???

0830 introduction and overview -Paul Sternberg

                Overview of Project, Funding, The Alliance, Big Picture, Issues, Outreach, 

0900 dataflow and backend: status and plans -Kevin Howe

                Status

0945 curation: status and plans -Chris Grove

                Prioritization of datatypes
                How this is impacted by Alliance

1030 break

1100 website: status and plans - Todd Harris

               DevOps
               Tools
               Running on datomic

1130 tools and displays;status and plans

                WormMine -
                Ontology Browsing  -Raymond 
                ParaSite - Kevin Howe

1200 lunch

1300 SAB discussion

1430 Feedback, and Discussion

1630 conclude

Dinner for those who are not departing immediately

Evening, Friday, July 13