Difference between revisions of "2014 Advisory Board Meeting"

From WormBaseWiki
Jump to navigationJump to search
Line 43: Line 43:
 
** Introduction (Todd - 20 mins)
 
** Introduction (Todd - 20 mins)
 
** Development summary (Sibyl/Todd - ?? mins)
 
** Development summary (Sibyl/Todd - ?? mins)
 +
  
 
* Sequence annotation and production informatics
 
* Sequence annotation and production informatics
Line 49: Line 50:
 
** Sequence Feature Curation (Mary Ann - 10 mins)
 
** Sequence Feature Curation (Mary Ann - 10 mins)
 
** WormBase ParaSite (Kevin - 15 mins)
 
** WormBase ParaSite (Kevin - 15 mins)
 +
  
 
* Literature curation and functional annotation
 
* Literature curation and functional annotation
Line 56: Line 58:
 
** Gene expression (Wen Chen - 10 mins)
 
** Gene expression (Wen Chen - 10 mins)
 
** Ontology browser and use (Raymond - 10 mins)
 
** Ontology browser and use (Raymond - 10 mins)
 +
  
 
* Nomenclature  
 
* Nomenclature  
 
**update (Mary Ann - 10 mins)
 
**update (Mary Ann - 10 mins)
 +
  
 
* Database migration and WormBase 3.0 vision
 
* Database migration and WormBase 3.0 vision

Revision as of 10:49, 19 September 2014

Logistics

Advisors


Dates and Location

  • EBI, Hinxton, UK
  • Sunday 5th October PM: Consortium meeting, EBI (advisors not present)
  • Monday 6th October: whole-group advisory board meeting (talks and discussion), EBI
  • Tuesday 7th October: AM - advisors report back (first to whole group, then to PIs); PM - depart

Arrivals/departures

  • Accommodation: all delegates to be housed on Hinxton genome campus.
  • SAB arrive Sunday evening, leave Tuesday afternoon
  • Staff: arrive Sat evening (or Sunday morning), leave Tuesday afternoon/evening

Talk ideas

  • Cross-site themes
    • Database migration
    • Topic curation/pages
    • Human Disease Portal
    • Improved community annotation via a CANTO-like tool
    • WormBase ParaSite

Confirmed talks

    estimated times should INCLUDE discussion!!!!!!
  • Introduction/Vision/Issues (Paul Sternberg)
  • Web-site
    • Introduction (Todd - 20 mins)
    • Development summary (Sibyl/Todd - ?? mins)


  • Sequence annotation and production informatics
    • Overview (Kevin - 20 mins)
    • Sequence curation update (including parasitic nematodes) (Paul / Gary / Michael - 2 x 15 mins)
    • Sequence Feature Curation (Mary Ann - 10 mins)
    • WormBase ParaSite (Kevin - 15 mins)


  • Literature curation and functional annotation
    • Overview (Chris - 20 mins)
    • GO curation and modeling (Kimberly - 15 mins)
    • Worm models of human disease (Ranjana - 10 mins)
    • Gene expression (Wen Chen - 10 mins)
    • Ontology browser and use (Raymond - 10 mins)


  • Nomenclature
    • update (Mary Ann - 10 mins)


  • Database migration and WormBase 3.0 vision
    • An overview of EuthPathDB infrastructure and production informatics (Brian Brunk - 15 mins)
    • CANTO (Val Wood - 10 mins)
    • Discussion about vision for WormBase 3.0 (all)

Draft Agenda

  • Sunday 5th October
    • PM: consortium meeting
      • working groups:
        • database migration
        • phenologs: curating phenotypes/variation for better comparability with human disease gene function
        • RNAi mapping (review of mapping pipeline and extension to other species)
      • group discussion of website and user experience
  • Monday 5th October
    • AM: talks (TBD)
    • PM: talks (TBD)
  • Tuesday 7th October
    • 8-9.30am: advisors meet over breakfast
    • 9.30am-12pm - advisors report back to whole group and/or PIs
    • PM: depart; for those with later flights, potential for breakout groups