Difference between revisions of "2014 Advisory Board Meeting"

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* [http://www.genome.gov/27545578 Peter Good]
 
* [http://www.genome.gov/27545578 Peter Good]
 
* Brian Brunk
 
* Brian Brunk
* [http://maizelsgroup.biology.ed.ac.uk Rick Maizels] (arrives after lunch on Monday 6th)
+
* [http://maizelsgroup.biology.ed.ac.uk Rick Maizels]  
  
 
===Dates and Location===
 
===Dates and Location===
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* Sunday 5th October PM:  Consortium meeting, EBI (advisors not present)
 
* Sunday 5th October PM:  Consortium meeting, EBI (advisors not present)
 
* Monday 6th October: whole-group advisory board meeting (talks and discussion), EBI
 
* Monday 6th October: whole-group advisory board meeting (talks and discussion), EBI
* Tuesday 7th October: AM - advisors report back (first to whole group, then to PIs); PM - depart
+
* Tuesday 7th October: AM - advisors report back and discussion
  
=== Arrivals/departures===
+
=== Accommodation ===
  
* Accommodation: all delegates to be housed on Hinxton genome campus.
+
For those staying on campus at the conference centre:
* SAB arrive Sunday evening, leave Tuesday afternoon
 
* Staff: arrive Sat evening (or Sunday morning), leave Tuesday afternoon/evening
 
  
= Talk ideas =
+
* Booking reference for Rick Maizels: 5714
 +
* Booking reference for everyone else: 4483
 +
* Check in is from 2pm on the day of arrival and check out at 10am on the day of departure. Breakfast is included and is served from 07:30-09:00 on weekdays, 07.00-10.00 at weekends.
 +
* Please contact the conference centre directly on +44 (0) 1223 495000 with questions/changes changes quoting the reference number above.
  
* Cross-site themes
+
= Agenda =
** Database migration
 
** Topic curation/pages
 
** Human Disease Portal
 
** Improved community annotation via a [http://www.ncbi.nlm.nih.gov/pubmed/24574118 CANTO]-like tool
 
** WormBase ParaSite
 
  
= Confirmed talks =
+
=== Sunday 5th October ===
    estimated times should INCLUDE discussion!!!!!!
 
* Introduction/Vision/Issues (Paul Sternberg)
 
  
* Website
+
* 13.00 consortium meeting
** Usage, user community, cloud migration, new features (Todd; 45 minutes)
+
** working groups: 
 +
*** database migration
 +
*** phenologs: curating phenotypes/variation for better comparability with human disease gene function
 +
*** RNAi mapping (review of mapping pipeline and extension to other species)
 +
** group discussions
 +
*** website and user experience
 +
*** ParaSite and integration with WormBase central. 
 +
* 18:00(ish) - dinner + drinks (in Cambridge?)
  
 +
=== Monday 6th October ===
  
* Sequence annotation and production informatics
+
* 09.15 Introduction/Vision/Issues - Paul Sternberg
** Overview (Kevin - 20 mins)
+
* 09.30 Genome annotation and production informatics
** Sequence curation update (including parasitic nematodes) (Paul / Gary / Michael - 2 x 15 mins)
+
** 09.30 Overview of database production - Kevin Howe
** Regulatory Sequence Feature Curation (Mary Ann - 10 mins)
+
** 09.45 Caenorhabditis sequence curation - Gary Williams
** WormBase ParaSite (Kevin - 15 mins)
+
** 10.00 Nematode ncRNA annotation - Paul Davis
 +
** 10.15 Curation of regulatory sequence features in C.elegans - Mary Ann Tuli
 +
** 10.30 Parasitic nematode gene model curation - Michael Paulini
 +
** 10.45 WormBase ParaSite - Kevin Howe
 +
* 11:00 BREAK
 +
* 11:30 Database migration project
 +
** 11.30 Introduction and motivation - Kevin Howe / Todd Harris
 +
** 11.45 Technology investigation: progress report - Thomas Down
 +
** 12.00 An overview of EuPathDB infrastructure and production informatics - Brian Brunk
 +
* 12.30 Lunch
 +
* 14.00 Web-site
 +
** 14:00 Usage, user community, leveraging the cloud, new features - Todd Harris
 +
* 14:45 Curation of gene function
 +
** 14:45 Overview - Chris Grove
 +
** 15.00 Process / Topic curation - Karen Yook
 +
** 15.15 GO curation and modeling - Kimberly van Auken
 +
** 15.30 Worm models of human disease - Ranjana Kishore
 +
* 15.45 BREAK
 +
* 16.15 Curation of gene function (continued)
 +
** 16.15 CANTO - Val Wood
 +
** 16.30 Gene expression - Wen Chen
 +
** 16.45 Ontology browser and use - Raymond Lee
 +
** 17.00 Nomenclature update - Mary Ann Tuli
  
* Literature curation and functional annotation
+
* 19:00 Dinner at Hinxton Red Lion
** Overview (Chris - 20 mins)
 
** GO curation and modeling (Kimberly - 15 mins)
 
** Worm models of human disease (Ranjana - 10 mins)
 
** Gene expression (Wen Chen - 10 mins)
 
** Ontology browser and use (Raymond - 10 mins)
 
  
* Nomenclature
+
=== Tuesday 7th October ===
**update (Mary Ann - 10 mins)
 
  
* Database migration and WormBase 3.0 vision
+
* 09.00 Advisors meet
** An overview of EuthPathDB infrastructure and production informatics (Brian Brunk - 15 mins)
+
* 10.00 Advisors report back / further discussion
** CANTO (Val Wood - 10 mins)
+
* 12.30 Lunch / Close
** Discussion about vision for WormBase 3.0  (all)
 
 
 
= Draft Agenda =
 
 
 
* Sunday 5th October
 
** PM: consortium meeting
 
*** working groups: 
 
**** database migration
 
**** phenologs: curating phenotypes/variation for better comparability with human disease gene function
 
**** RNAi mapping (review of mapping pipeline and extension to other species)
 
*** group discussion of website and user experience
 
** 18:00(ish) - dinner (could order pizza to campus?)
 
 
 
* Monday 6th October
 
** 09.15 Introduction/Vision/Issues (Paul Sternberg)
 
** 09.30 Genome annotation and production informatics
 
*** 09.30 Overview of database production (Kevin Howe)
 
*** 09.50 Caenorhabditis sequence curation (Gary Williams)
 
*** 10.05 Nematode ncRNA annotation (Paul Davis)
 
*** 10.15 Curation of regulatory sequence features in C.elegans - Mary Ann Tuli
 
** 10:30 BREAK
 
** 11:00 Database migration project
 
*** 11.00 Introduction and motivation - Kevin Howe / Todd Harris
 
*** 11.15 Technology investigation: progress report - Thomas Down
 
*** 11.30 An overview of EuPathDB infrastructure and production informatics - Brian Brunk
 
*** 11.45 CANTO - Val Wood
 
*** 12.00 Discussion/Overflow
 
** 12.30 Lunch
 
** 14.00 Web-site
 
*** 14:00 Usage, user community, cloud migration, new features - Todd Harris
 
** 14:45 Literature curation and nomenclature
 
*** 14:45 Overview - Chris Grove
 
*** 15.00 Process / Topic curation - Karen Yook
 
*** 15.15 GO curation and modeling - Kimberly van Auken
 
*** 15.30 Worm models of human disease - Ranjana Kishore
 
** 15.45 BREAK
 
** 16.15 Literature curation and nomenclature (continued)
 
*** 16.15 Gene expression - Wen Chen
 
*** 16.25 Ontology browser and use - Raymond Lee
 
*** 16.35 Nomenclature update - Mary Ann Tuli
 
** 16.45 Parasitic nematodes
 
*** 16.45 Parasitic nematode gene model curation - Michael Paulini
 
*** 17.00 WormBase ParaSite - Kevin Howe
 
** 19:00 Dinner at Hinxton Red Lion
 
 
 
* Tuesday 7th October
 
** 09.00 Advisors meet
 
** 10.00 Advisors report back / further discussion
 

Latest revision as of 07:19, 6 October 2014

Logistics

Advisors

Dates and Location

  • EBI, Hinxton, UK
  • Sunday 5th October PM: Consortium meeting, EBI (advisors not present)
  • Monday 6th October: whole-group advisory board meeting (talks and discussion), EBI
  • Tuesday 7th October: AM - advisors report back and discussion

Accommodation

For those staying on campus at the conference centre:

  • Booking reference for Rick Maizels: 5714
  • Booking reference for everyone else: 4483
  • Check in is from 2pm on the day of arrival and check out at 10am on the day of departure. Breakfast is included and is served from 07:30-09:00 on weekdays, 07.00-10.00 at weekends.
  • Please contact the conference centre directly on +44 (0) 1223 495000 with questions/changes changes quoting the reference number above.

Agenda

Sunday 5th October

  • 13.00 consortium meeting
    • working groups:
      • database migration
      • phenologs: curating phenotypes/variation for better comparability with human disease gene function
      • RNAi mapping (review of mapping pipeline and extension to other species)
    • group discussions
      • website and user experience
      • ParaSite and integration with WormBase central.
  • 18:00(ish) - dinner + drinks (in Cambridge?)

Monday 6th October

  • 09.15 Introduction/Vision/Issues - Paul Sternberg
  • 09.30 Genome annotation and production informatics
    • 09.30 Overview of database production - Kevin Howe
    • 09.45 Caenorhabditis sequence curation - Gary Williams
    • 10.00 Nematode ncRNA annotation - Paul Davis
    • 10.15 Curation of regulatory sequence features in C.elegans - Mary Ann Tuli
    • 10.30 Parasitic nematode gene model curation - Michael Paulini
    • 10.45 WormBase ParaSite - Kevin Howe
  • 11:00 BREAK
  • 11:30 Database migration project
    • 11.30 Introduction and motivation - Kevin Howe / Todd Harris
    • 11.45 Technology investigation: progress report - Thomas Down
    • 12.00 An overview of EuPathDB infrastructure and production informatics - Brian Brunk
  • 12.30 Lunch
  • 14.00 Web-site
    • 14:00 Usage, user community, leveraging the cloud, new features - Todd Harris
  • 14:45 Curation of gene function
    • 14:45 Overview - Chris Grove
    • 15.00 Process / Topic curation - Karen Yook
    • 15.15 GO curation and modeling - Kimberly van Auken
    • 15.30 Worm models of human disease - Ranjana Kishore
  • 15.45 BREAK
  • 16.15 Curation of gene function (continued)
    • 16.15 CANTO - Val Wood
    • 16.30 Gene expression - Wen Chen
    • 16.45 Ontology browser and use - Raymond Lee
    • 17.00 Nomenclature update - Mary Ann Tuli
  • 19:00 Dinner at Hinxton Red Lion

Tuesday 7th October

  • 09.00 Advisors meet
  • 10.00 Advisors report back / further discussion
  • 12.30 Lunch / Close