Difference between revisions of "2014 Advisory Board Meeting"

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''Tentative schedule for WormBase Advisory board meeting 2014'''
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= Logistics =
EBI, Hinxton, UK
 
  
Sunday 5th October PM: Consortium meeting, EBI (advisors not present)
+
===Advisors===
Monday 6th October: whole-group advisory board meeting (talks and discussion), EBI
 
Tuesday 7th October. AM: advisors report back to either whole group;
 
PM: 1-2, post-meeting discussion of action items emanating from the meeting.
 
  
'''Logistics:'''
+
* [http://www.gurdon.cam.ac.uk/~ahringerlab/ Julie Ahringer] (present only after 2pm on Monday 6th)
acccomodation (EBI housing??)
+
* [http://www2.mrc-lmb.cam.ac.uk/group-leaders/a-to-g/mario-de-bono Mario de Bono]
SAB: arrive Sunday evening, leave Tuesday afternoon
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* [http://www.gen.cam.ac.uk/directory/nick-brown Nick Brown]
Staff: arrive Sat evening (or Sunday morning), leave Tuesday afternoon/evening
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* [http://www.ciml.univ-mrs.fr/science/lab-jonathan-ewbank/experts Jonathan Ewbank]
 +
* [http://www.eb.tuebingen.mpg.de/research/departments/evolutionary-biology.html Ralf Sommer]
 +
* [http://www.sysbiol.cam.ac.uk/Investigators/val-wood Val Wood]
 +
* [http://www.ebi.ac.uk/about/people/ewan-birney Ewan Birney] (present only 11am-2pm on Monday 6th)
 +
* [http://www.genome.gov/27545578 Peter Good]
 +
* Brian Brunk
 +
* [http://maizelsgroup.biology.ed.ac.uk Rick Maizels]
 +
 
 +
===Dates and Location===
 +
 
 +
* EBI, Hinxton, UK
 +
* Sunday 5th October PM:  Consortium meeting, EBI (advisors not present)
 +
* Monday 6th October: whole-group advisory board meeting (talks and discussion), EBI
 +
* Tuesday 7th October: AM - advisors report back and discussion
 +
 
 +
=== Accommodation ===
 +
 
 +
For those staying on campus at the conference centre:
 +
 
 +
* Booking reference for Rick Maizels: 5714
 +
* Booking reference for everyone else: 4483
 +
* Check in is from 2pm on the day of arrival and check out at 10am on the day of departure. Breakfast is included and is served from 07:30-09:00 on weekdays, 07.00-10.00 at weekends.
 +
* Please contact the conference centre directly on +44 (0) 1223 495000 with questions/changes changes quoting the reference number above.
 +
 
 +
= Agenda =
 +
 
 +
=== Sunday 5th October ===
 +
 
 +
* 13.00 consortium meeting
 +
** working groups: 
 +
*** database migration
 +
*** phenologs: curating phenotypes/variation for better comparability with human disease gene function
 +
*** RNAi mapping (review of mapping pipeline and extension to other species)
 +
** group discussions
 +
*** website and user experience
 +
*** ParaSite and integration with WormBase central. 
 +
* 18:00(ish) - dinner + drinks (in Cambridge?)
 +
 
 +
=== Monday 6th October ===
 +
 
 +
* 09.15 Introduction/Vision/Issues - Paul Sternberg
 +
* 09.30 Genome annotation and production informatics
 +
** 09.30 Overview of database production - Kevin Howe
 +
** 09.45 Caenorhabditis sequence curation - Gary Williams
 +
** 10.00 Nematode ncRNA annotation - Paul Davis
 +
** 10.15 Curation of regulatory sequence features in C.elegans - Mary Ann Tuli
 +
** 10.30 Parasitic nematode gene model curation - Michael Paulini
 +
** 10.45 WormBase ParaSite - Kevin Howe
 +
* 11:00 BREAK
 +
* 11:30 Database migration project
 +
** 11.30 Introduction and motivation - Kevin Howe / Todd Harris
 +
** 11.45 Technology investigation: progress report - Thomas Down
 +
** 12.00 An overview of EuPathDB infrastructure and production informatics - Brian Brunk
 +
* 12.30 Lunch
 +
* 14.00 Web-site
 +
** 14:00 Usage, user community, leveraging the cloud, new features - Todd Harris
 +
* 14:45 Curation of gene function
 +
** 14:45 Overview - Chris Grove
 +
** 15.00 Process / Topic curation - Karen Yook
 +
** 15.15 GO curation and modeling - Kimberly van Auken
 +
** 15.30 Worm models of human disease - Ranjana Kishore
 +
* 15.45 BREAK
 +
* 16.15 Curation of gene function (continued)
 +
** 16.15 CANTO - Val Wood
 +
** 16.30 Gene expression - Wen Chen
 +
** 16.45 Ontology browser and use - Raymond Lee
 +
** 17.00 Nomenclature update - Mary Ann Tuli
 +
 
 +
* 19:00 Dinner at Hinxton Red Lion
 +
 
 +
=== Tuesday 7th October ===
 +
 
 +
* 09.00 Advisors meet
 +
* 10.00 Advisors report back / further discussion
 +
* 12.30 Lunch / Close

Latest revision as of 07:19, 6 October 2014

Logistics

Advisors

Dates and Location

  • EBI, Hinxton, UK
  • Sunday 5th October PM: Consortium meeting, EBI (advisors not present)
  • Monday 6th October: whole-group advisory board meeting (talks and discussion), EBI
  • Tuesday 7th October: AM - advisors report back and discussion

Accommodation

For those staying on campus at the conference centre:

  • Booking reference for Rick Maizels: 5714
  • Booking reference for everyone else: 4483
  • Check in is from 2pm on the day of arrival and check out at 10am on the day of departure. Breakfast is included and is served from 07:30-09:00 on weekdays, 07.00-10.00 at weekends.
  • Please contact the conference centre directly on +44 (0) 1223 495000 with questions/changes changes quoting the reference number above.

Agenda

Sunday 5th October

  • 13.00 consortium meeting
    • working groups:
      • database migration
      • phenologs: curating phenotypes/variation for better comparability with human disease gene function
      • RNAi mapping (review of mapping pipeline and extension to other species)
    • group discussions
      • website and user experience
      • ParaSite and integration with WormBase central.
  • 18:00(ish) - dinner + drinks (in Cambridge?)

Monday 6th October

  • 09.15 Introduction/Vision/Issues - Paul Sternberg
  • 09.30 Genome annotation and production informatics
    • 09.30 Overview of database production - Kevin Howe
    • 09.45 Caenorhabditis sequence curation - Gary Williams
    • 10.00 Nematode ncRNA annotation - Paul Davis
    • 10.15 Curation of regulatory sequence features in C.elegans - Mary Ann Tuli
    • 10.30 Parasitic nematode gene model curation - Michael Paulini
    • 10.45 WormBase ParaSite - Kevin Howe
  • 11:00 BREAK
  • 11:30 Database migration project
    • 11.30 Introduction and motivation - Kevin Howe / Todd Harris
    • 11.45 Technology investigation: progress report - Thomas Down
    • 12.00 An overview of EuPathDB infrastructure and production informatics - Brian Brunk
  • 12.30 Lunch
  • 14.00 Web-site
    • 14:00 Usage, user community, leveraging the cloud, new features - Todd Harris
  • 14:45 Curation of gene function
    • 14:45 Overview - Chris Grove
    • 15.00 Process / Topic curation - Karen Yook
    • 15.15 GO curation and modeling - Kimberly van Auken
    • 15.30 Worm models of human disease - Ranjana Kishore
  • 15.45 BREAK
  • 16.15 Curation of gene function (continued)
    • 16.15 CANTO - Val Wood
    • 16.30 Gene expression - Wen Chen
    • 16.45 Ontology browser and use - Raymond Lee
    • 17.00 Nomenclature update - Mary Ann Tuli
  • 19:00 Dinner at Hinxton Red Lion

Tuesday 7th October

  • 09.00 Advisors meet
  • 10.00 Advisors report back / further discussion
  • 12.30 Lunch / Close