Difference between revisions of "2010.05 OICR WebDev Meeting"
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* Abby: built WS205, migrated to new biomart machine'' | * Abby: built WS205, migrated to new biomart machine'' | ||
− | TODO | + | '''TODO''' |
* Abby: might be some configuration problems with Apache | * Abby: might be some configuration problems with Apache | ||
* TH: setting up as subdomain, virtual host | * TH: setting up as subdomain, virtual host | ||
− | == Update | + | == Development Update Pipeline == |
− | * Norie: added support for mirroring databases | + | * Norie: added support for mirroring pre-prepared GFF mysql databases fom Sanger |
− | + | ||
+ | '''TODO''' | ||
+ | * Continue update to WS214 | ||
+ | * GFF MySQL code to be tested with WS215 | ||
== modENCODE == | == modENCODE == | ||
Line 18: | Line 21: | ||
* Emailed dev list | * Emailed dev list | ||
* Added caveat | * Added caveat | ||
− | + | ||
+ | '''TODO''' | ||
+ | * Need to copy over configuration stanzas to production configuration files | ||
+ | ** GBrowse-1.70 | ||
+ | ** GBrowse-2.03 | ||
== GBrowse == | == GBrowse == | ||
* Debugged various plugin issues | * Debugged various plugin issues | ||
− | * '''add initial landmark config | + | * SequenceDumper.pm and FastaDumper.pm issues |
+ | |||
+ | '''TODO''' | ||
+ | * add initial landmark config | ||
+ | * set up GBrowse 1.x @ OICR and update proxy | ||
+ | * XQ: Ensure feature parity between GB1/GB2 | ||
+ | * Resolve preservation of track selection prefs problem | ||
+ | * TH: Karyotype hosting? | ||
+ | * resolve keyword searching issue (ie unc-9) | ||
+ | * Sanger: nucleosome data | ||
+ | == Admin == | ||
+ | * TH: migrate wiki, forums, blog | ||
+ | ** added subdomains | ||
+ | ** update urchin tracking | ||
+ | ** updated proxy config | ||
+ | ** added 301 redirects | ||
+ | ** update index.html | ||
+ | * TH: added analytics for subdomains | ||
+ | * TH: Cleaned up calendar on Wiki; embedded google calendar; added events | ||
+ | |||
+ | '''TODO''' | ||
+ | * TH: modify hostnames to reflect purpose | ||
+ | * TH: backups/crises recovery plan | ||
+ | * TH : wormbase infrastructre doc | ||
+ | * migrate aceserver | ||
+ | ** wb-blast | ||
+ | ** perl 5.10.1 | ||
+ | ** modules | ||
+ | ** acedb | ||
+ | * TH: set up QA/QC testing schedule | ||
+ | * Set up dev environment for new site | ||
== Rearchitecture == | == Rearchitecture == | ||
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* Expanded class coverage | * Expanded class coverage | ||
* Norie working on additional classes | * Norie working on additional classes | ||
− | |||
+ | '''TODO''' | ||
+ | * TH: prioritize order in which classes/pages should be converted. | ||
+ | ** Gene (NdlC) | ||
+ | ** Protein (XQ) | ||
+ | ** Variation (TH) | ||
+ | ** Sequence (XQ) | ||
+ | ** Person (TH) | ||
+ | ** Paper (XQ) | ||
+ | ** Strain (NdlC) | ||
+ | === Environment=== | ||
+ | '''TODO''' | ||
+ | * TH:to establish dev environment | ||
− | |||
− | |||
− | |||
Line 56: | Line 101: | ||
* Issue Tracker issues | * Issue Tracker issues | ||
* OICR aceserver | * OICR aceserver | ||
+ | |||
+ | |||
+ | [[Category:Meetings]] |
Latest revision as of 19:14, 10 August 2010
Contents
Meeting summary
BioMart
- Abby: built WS205, migrated to new biomart machine
TODO
- Abby: might be some configuration problems with Apache
- TH: setting up as subdomain, virtual host
Development Update Pipeline
- Norie: added support for mirroring pre-prepared GFF mysql databases fom Sanger
TODO
- Continue update to WS214
- GFF MySQL code to be tested with WS215
modENCODE
- Xiaoqi: migrated current modENCODE data to production
- Emailed dev list
- Added caveat
TODO
- Need to copy over configuration stanzas to production configuration files
- GBrowse-1.70
- GBrowse-2.03
GBrowse
- Debugged various plugin issues
- SequenceDumper.pm and FastaDumper.pm issues
TODO
- add initial landmark config
- set up GBrowse 1.x @ OICR and update proxy
- XQ: Ensure feature parity between GB1/GB2
- Resolve preservation of track selection prefs problem
- TH: Karyotype hosting?
- resolve keyword searching issue (ie unc-9)
- Sanger: nucleosome data
Admin
- TH: migrate wiki, forums, blog
- added subdomains
- update urchin tracking
- updated proxy config
- added 301 redirects
- update index.html
- TH: added analytics for subdomains
- TH: Cleaned up calendar on Wiki; embedded google calendar; added events
TODO
- TH: modify hostnames to reflect purpose
- TH: backups/crises recovery plan
- TH : wormbase infrastructre doc
- migrate aceserver
- wb-blast
- perl 5.10.1
- modules
- acedb
- TH: set up QA/QC testing schedule
- Set up dev environment for new site
Rearchitecture
Database Connectivity
- Xiaoqi: converting from lock based method to one checking status
- Xiaoqi: code done next week or so.
API
- Standardized data structure
- Expanded class coverage
- Norie working on additional classes
TODO
- TH: prioritize order in which classes/pages should be converted.
- Gene (NdlC)
- Protein (XQ)
- Variation (TH)
- Sequence (XQ)
- Person (TH)
- Paper (XQ)
- Strain (NdlC)
Environment
TODO
- TH:to establish dev environment
Visit goals
- Benchmarks
- Tests
- Documentation
- Sanger Databases
- Issue Tracker issues
- OICR aceserver