Difference between revisions of "100209 seqchange"

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! A phenotype figure.
 
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'''Precision''': 50-70%
 
'''Precision''': 50-70%
  
'''Recall''': 100% (didn't check entire list of supplements, though)
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'''Recall''': 100% (for both data types, but haven't checked entire list of supplements)
  
 
'''Correlation''' between seqchange and genesymbol: 30%
 
'''Correlation''' between seqchange and genesymbol: 30%
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'''Assessing Negatives:'''
  
 
[http://caprica.caltech.edu/celegans/svm_results/100209/checkFalseNegatives/100209_091809_checkFN_seqchange Negatives]
 
[http://caprica.caltech.edu/celegans/svm_results/100209/checkFalseNegatives/100209_091809_checkFN_seqchange Negatives]
  
So far, 12/12 Negatives are True Negatives:
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So far, 17/17 Negatives are True Negatives:
  
 
WBPaper00035204
 
WBPaper00035204
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WBPaper00035226
 
WBPaper00035226
  
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WBPaper00035222.sup.1
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WBPaper00035222.sup.2
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WBPaper00035222.sup.3
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WBPaper00035222.sup.4
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WBPaper00035222.sup.5
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WBPaper00035222.sup.6
  
  
 
Back to [http://www.wormbase.org/wiki/index.php/WormBase_SVMs WormBase SVMs]
 
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[[Category:Curation]]

Latest revision as of 18:58, 10 August 2010

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WBPaper ID SVM confidence True positive for seqchange? True positive for genesymbol? Comments
WBPaper00035194 high Sort of No Discusses extent of 2 tm deletions; not first description of glf-1 in the literature.
WBPaper00035201 high No No Paper discussed mRNA sequences bound to protein. The term 'sequence' in various forms was used frequently.
WBPaper00035202 high Sort of No Describes a plc-4 mutant allele made using a new knock-out strategy.
WBPaper00035203 high No No This paper used a lot of plasmid constructs and talked about promoter sequences.
WBPaper00035211 high Sort of No Sequencing of mutant alleles not done in this paper, but a lot of discussion about the molecular nature of the alleles used for the experiments.
WBPaper00035215 high Yes Yes rpa-9/nol-6 allelism and sequence of point mutation
WBPaper00035219 high Yes Yes First detailed molecular characterization of let-721 gene and protein.
WBPaper00035221 high Yes No New sequencing technology (galign) describing lots of mutations.
WBPaper00035222 high Yes Yes mrt-1 cloning and characterization
WBPaper00035226.sup.6 medium No No A phenotype figure.


Precision: 50-70%

Recall: 100% (for both data types, but haven't checked entire list of supplements)

Correlation between seqchange and genesymbol: 30%


Assessing Negatives:

Negatives

So far, 17/17 Negatives are True Negatives:

WBPaper00035204

WBPaper00035205

WBPaper00035206

WBPaper00035212

WBPaper00035214

WBPaper00035216

WBPaper00035220

WBPaper00035223

WBPaper00035224

WBPaper00035225

WBPaper00035226

WBPaper00035222.sup.1

WBPaper00035222.sup.2

WBPaper00035222.sup.3

WBPaper00035222.sup.4

WBPaper00035222.sup.5

WBPaper00035222.sup.6


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