WBConfCall 2016.06.02-Agenda and Minutes

Agenda

Chair: Gary Williams

WS255 models

Freeze date 10th June

Proposals so far:

Chris

Additional level of data capture within the Interaction model for Physical Interactions.

?Interaction
    Interaction_type Physical Protein_protein
                              Protein_DNA
                              Protein_RNA

Mary Ann

Variation, additional Production_method.

Origin Production_method MosDEL

Open Issues

• GBrowse mouseover

Minutes

Model Changes

• Paul described the model changes - these are both simple.
• There were no problems found with these.

Variations in Human and Worm

• Ranjana said that Tim Schedl has asked about the status of modelling the same variation in Human and Worm.
• Kevin is working on this in conjunction with Sibyl who is developing a viewer.
• Karen raised the possibility of manual curation being required. This would require further model changes and would be a large task.
• It was felt that further discussion of this should wait until Kevin is back.
• Sibyl said that she would share her work on the viewer with anyone who wanted to see what it looks like.

WS253

• Raymond wanted to know when this would go live because he has already updated the Ontology Browser.
• Todd said that is was delayed by a few days.

Datomic

• Chris is interested in doing some Datomic queries to learn more about it. He wanted to know if there was an equivalent of the ACE models file.
• There is an annotated Models file and a lisp-like file giving details of the tag-names etc. Matt will share the URL for these on the staff mailing list.

Simple Mine

• Raymond asked if anyone had objections to a simple gene data mining tool.
• Nobody objected.
• This will be based on FraqMine.
• Raymond will start a GitHub ticket for people to discuss this project.

TAGC meeting

• Todd wanted to know how large the book of the meeting was.
• It is at least 22 pages - could be more, but less than 30.