WBConfCall 2014.01.09-Agenda and Minutes

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Agenda

Apologies for Absence

Paul S.

Models

As the call has crept up on us the models proposal deadline has been pushed back to 14th Jan to allow curators to get models in for WS242

Gene_clusters

Curator: Karen Y.

Theses changes to the ?Gene_cluster, ?Analysis, and ?WBProcess models are meant to allow the incorporation of phylogenetic profile-based gene clusters created by
1. Yuval Tabach et al., 2013 (WBPaper00041947) and
2. Michael Paulini (using all WB nematode species)
The proposed model changes are outlined on this google doc:
https://docs.google.com/a/wormbase.org/document/d/1Hpjg6AwKeF5jFcCsuwb1Gy6_dj8gTPVj-_Ax1D4Vb-U/edit?usp=sharing
Please let me know if you cannot access it.


Construct/Variation Models

Curator: Karen Y.?

We are still working on this, perhaps we can propose it within the 9-14th time frame?


Rnaseq_library

Curator: Gary W.

I would like to propose a new model class to hold information about RNASeq libraries.

Details


GO annotation model

Curator: Kimberly V.

This isn't proposed for WS242, but is currently being developed for future consideration.

Almost complete and will advise when ready.

WS242 schedule proposal

Date Phase
9th - 14th Jan Model proposals
15th - 22nd Jan Models Development/Incorporation
23rd - 30th Jan Upload Preparation
31st Jan Upload
3rd Feb WS242 Build Starts

Outstanding Help Desk Issues

Current officer (2014-01-06) James Done

Minutes

Attendance: 

           Hinxton, T. Harris, D. Raciti, X. Wang, K. Van Auken, J. Chan,
           K. Yook, R. Kishore, W. Chen, G. Schindelman, R. Lee, J. Done,
           P. Davis, G. Williams, K.Howe,

Models

GO Annotation Model 

  There was a discussion of pathogen species objects.
  Raymond mentioned that one should adhere to NCBI standards.


RNASeq Library Class 

  There was a discussion of this library class.


WS242 schedule proposal

WS242 Schedule agreed. 

  Models proposal until end of business Tuesday 14th
  Models file tagged for use 23rd/24th
  Thursday 23 January 2014 is next meeting.
  Submit files Tuesday 28 January 2014.
  Upload files Friday 31 January 2014.

Helpdesk

no outstanding issues

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