Update Matrix WS220
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Jump to navigationJump to searchCheck | Note | Related Compile Step |
---|---|---|
Are the correct ontology files in /u/l/w/databases? | Mirror Ontology from Sanger | |
Were the additional ontology files generated? | Compile Ontology Resources | |
Is the Multi-Ontology Search Running? URL: http://dev.wormbase.org/db/ontology/search |
ok | Compile Ontology Resources |
Are the Ontology related summary pages working? | ok | Compile Ontology Resources |
Does ePCR work? http://dev.wormbase.org/db/searches/epcr |
ok | Create ePRC DBs |
Are the appropriate tracks visible on the appropriate genomes http://dev.wormbase.org/db/seq/sequence?name=AC7;class=Sequence |
ok | Load GFF DBs |
Is the EST aligner working? http://dev.wormbase.org/db/seq/aligner |
ok | Load GFF DBs |
Is the Gene Details Page working? http://dev.wormbase.org/db/gene/gene?name=amx-2;class=Gene;details=1;dna=B0019.1 |
ok | Load GFF DBs |
Can you do a disease search? http://dev.wormbase.org/db/orthology/disease |
ok | Compile orthology resources |
Can you list diseases for a gene? http://dev.wormbase.org/db/orthology/disease?related=WBGene00006803 |
ok | Compile orthology resources |
Can you list interactions? http://dev.wormbase.org/db/gene/interaction?list=WBGene00001188 |
ok | Compile interaction resources |
Can you list the available position matrices? http://dev.wormbase.org/db/seq/position_matrix?list=all |
ok | Compile position matrices |
Can you run a CLUSTAL search? http://dev.wormbase.org/db/seq/show_mult_align |
ok | Update CLUSTAL database |
Is strain data available? | ok | run Strain update |
Are all the files for FTP present? | ok |