WBConfCall 2022.09.01-Agenda and Minutes

Help desk issues

• Fosmid and clone availability #8649
  • No availability seems to be the word- most replies were negative
  • Urgently need to update pages https://wiki.wormbase.org/index.php/Fosmids and https://wiki.wormbase.org/index.php/Cosmids/YACs to reflect real lack of availability
  • Sanger is now providing clones (after being closed for a long time for the pandemic). We should publish a blog post and update our wiki

• https://github.com/WormBase/website/issues/8761
  • Magda is working on it. We have the data
• https://github.com/WormBase/website/issues/8760
  • Raymond looked into the variant data but we don't have additional info. In terms of the deletion we don't have seq info so it's not on the seq browser. Magda can help but she will need to study the paper
• https://github.com/WormBase/website/issues/8759
  • pseudo gene sequences should be on the website. Magda will investigat

• Check if the reply to #8755 was sent to the user via email
  • done

• check https://github.com/WormBase/website/issues/8756 (for webteam)
  • done

• phosphoproteomic dataset and rnai dataset - Magdalena is working on it. There's a lot of data and a lot of work to integrate it.

Agenda

• Grant progress & questions

• Data/classes already harmonized in Alliance

https://docs.google.com/spreadsheets/d/1ZsxGlMHvWxPjRwI2jtIys-sQgZY602cf/edit#gid=284571688 - please all refresh/check

• New RNA-Seq processing pipeline towards Y4/Y5 of the grant? - okay, mention it

• Data on productivity over time (which releases to count, which data)?

• Do we need to add progress report? No - we don't think so, but we can double-check with NIH support? And we can add some progress data in the text

• Do references add to page count? No - we don't think so

• Model single-cell data, and Highlight genes, markers and reagents for that cell/type
  • Venn diagrams? Fold changes?
  • Need to modify the schema of expression_cluster - then calculate the numbers