WBConfCall 2022.08.04-Agenda and Minutes

Help desk issues

• Definition of "outcross" #8713
• Looking for C. elegans S28 #8703
• Report of missing genes from VC2010 #8715

 Hi,
 Are there any costs associated with depositing or accessing data in this repository? Especially for particularly large projects?
 Thank you,
 Brandon J. Wright, PhD
 Health Scientist Administrator (Program Officer)
 Office of Data Sharing
 CBIIT, OD, NCI, NIH
 301-846-1693

Agenda

• WormBase ParaSite:
  • Update Jbrowse to Jbrowse2
    • Probably no rush but in the near future
  • WB pipeline/scripts to generate jbrowse intron tracks
    • Scott to point out scripts for processing intron RNASeq data:
      • https://github.com/WormBase/website-genome-browsers/blob/jbrowse-production/jbrowse/bin/low_scoring_introns.pl
      • https://github.com/WormBase/website-genome-browsers/blob/jbrowse-production/jbrowse/bin/med_hi_scoring_introns.pl

GCB application https://docs.google.com/document/d/1juJ4mm1evay32lNt3OOsbKL36RY4_3cW/edit?pli=1# Are we all happy we are on track? Any outstanding actions?

• Paul to complete by EOD Friday

WB22 grant application - Format and next steps?

• Use 2017 application as template.