Movie
Contents
Movie Curation
In October 2012 we have decided to generate a movie OA. There were 514 movies in acedb, all pertaining the RNAi class. We are going to generate the movie OA and import those objects. Files on tazendra /home/acedb/draciti/Movies
Movie Data Model
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?Movie Description ?Text
Name UNIQUE Text
Pick_me_to_call Text Text
RNAi ?RNAi XREF Movie
Variation ?Variation XREF Movie
Expr_pattern ?Expr_pattern XREF Movie
Remark ?Text #Evidence
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OA
- Pgdbid -- no table -- postgres database ID, generates automatically upon entry.
- WBMovie -> "mov_name" Generates automatically upon entry. WBMovie0000000001
- Source -> "mov_source" text
- Description -> "mov_description" bigtext
- RNAi -> "mov_rnai" Text
There are 500 objects we currently have for movie/rnai are not in rnai OA but are stored in citace minus so we cannot import them as multiontology.
- Expression pattern -> "mov_exprpattern" multiontology on expression patterns as in Picture OA
- Variation -> "mov_variation" multiontology on variations like in phenotype OA tab1
- Remark -> "mov_remark" text
- Curator -> "mov_curator"
Future Directions
As of now (October 2012) movies come from 3 large scale studies
- Fraser et al, 2000
- Piano et al, 2000
- Murray et al, 2012
In the future if we are going to import more movies we have to make sure the file names will not overlap. To prevent this we can organize the folder in the same way we have pictures.
For this we should add in the ?Movie model the following tags
.ace dumper
module /home/postgres/work/citace_upload/movie/get_movie_ace.pm
script /home/postgres/work/citace_upload/movie/use_movie_package.pl
Populating RNAi-Movie data
/home/postgres/work/pgpopulation/mov_movie/20121012_newOa/populate_movies_20121012.pl done in sandbox.
