User contributions
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Jump to navigationJump to search- 20:32, 23 September 2007 diff hist +2,067 N BASIC PROTOCOL 4: EXAMINING A MOLECULAR SEQUENCE IN C. ELEGANS New page: WormBase has Sequence Pages as well as Gene Pages. Sequence Pages are focused on details of the nucleotide and predicted protein-coding sequences of genes. '''''Necessary Resources''''' ...
- 20:31, 23 September 2007 diff hist +5,440 N BASIC PROTOCOL 3: EXAMINING A GENE IN C. ELEGANS New page: '''''Necessary Resources''''' ''Hardware'' A standard computer with a reasonably fast connection to the Internet (cable modem, DSL, or Ethernet recommended) ''Software'' Web brows...
- 20:29, 23 September 2007 diff hist +3,324 N BASIC PROTOCOL 2: PERFORMING A DATABASE SEARCH New page: This protocol presents how to conduct a general search of WormBase '''''Necessary Resources''''' ''Hardware'' A standard computer with a reasonably fast connection to the Internet (...
- 20:26, 23 September 2007 diff hist +2,770 N BASIC PROTOCOL 1: NAVIGATING THE WormBase HOME PAGE New page: '''''Necessary Resources''''' ''Hardware'' A standard computer with a reasonably fast connection to the Internet (cable modem, DSL, or Ethernet recommended) ''Software'' Web br...
- 20:16, 23 September 2007 diff hist +2,391 N INTRODUCTION New page: WormBase is the major public biological database for the nematode ''Caenorhabditis elegans'' (Chen et al., 2005). It is meant to be useful to any biologist who wants to use ''C. elegans'',...
- 20:15, 23 September 2007 diff hist +1,859 N Searching WormBase for Information About C. elegans (Wiley) New page: == UNIT 1.8 Searching WormBase for Information About Caenorhabditis elegans == INTRODUCTION [[BASIC_PROTOCOL_1:_NAVIGATING_THE_WormBase_HOME_PAGE|BASIC PROTOCOL 1: NAVIGATING THE Wor...
- 20:10, 23 September 2007 diff hist +920 Release notes →Statistics by release
- 20:05, 23 September 2007 diff hist -200 Release notes →Statistics by release
- 19:57, 23 September 2007 diff hist -399 Release notes →Statistics by release
- 19:48, 23 September 2007 diff hist +25,548 Release notes
- 19:48, 23 September 2007 diff hist +1,077 N Release notes New page: == WormBase Release And Access Statistics == Access statistics are only available to WormBase curators and developers. == Statistics by year == {| cellpadding="10" ! colspan="7" | Inclu...
- 19:18, 23 September 2007 diff hist +2 NGASP Results →'''NGASP Gene prediction competition'''
- 19:17, 23 September 2007 diff hist +9,866 N NGASP Results New page: == '''NGASP Gene prediction competition''' == The nGASP project parallels recent computational prediction initiatives including CASP, GASP, and EGASP. Participation is open to all academi...
- 19:14, 23 September 2007 diff hist -2 NGASP →Data
- 19:13, 23 September 2007 diff hist -23 Gene finders
- 19:12, 23 September 2007 diff hist +5,826 N Gene finders New page: Here is a list of some gene-finders. This is only intended as a preliminary and incomplete list of gene-finders, and we hope very much that many other authors of gene-finders will particip...
- 19:09, 23 September 2007 diff hist +21,159 N ComparaTutorial New page: =Places= [ftp://ftp.sanger.ac.uk/pub2/wormbase/data/compara.tar.bz2 Compara tarball for WS163] (mysql dumps) [http://www.ensembl.org/info/software/compara/index.html Compara Page] (includ...
- 18:50, 23 September 2007 diff hist +2,959 N Discussion New page: Additional community feedback & discussion for the nGASP project: #Consider also evaluating pipeline on a small genomic region of ''C. briggsae''. Species-specific differences e.g. he...
- 18:43, 23 September 2007 diff hist +389 N Resources New page: Here are some details of resources created for the nGASP project, as well as who made them: *wiki: - Tristan *''C. elegans'' sample regions: FASTA format from WS160 - Avril *protein align...
- 18:41, 23 September 2007 diff hist -30 NGASP →nGASP rules
- 18:39, 23 September 2007 diff hist +2 Test and training regions →How the nGASP test and training regions were chosen
- 18:39, 23 September 2007 diff hist +2,104 N Test and training regions New page: =How the nGASP test and training regions were chosen= Here is information about how we chose the test and training regions for the nGASP project. These regions were chosen by dividing the...
- 18:36, 23 September 2007 diff hist +6,183 N WS160 New page: <pre> New release of WormBase WS160, Wormpep160 and Wormrna160 Thu Jun 15 16:29:46 BST 2006 WS160 was built by Ant and Michael ===========================================================...
- 18:34, 23 September 2007 diff hist +21,510 N NGASP New page: This is the website for '''nGASP''', the nematode genome annotation assessment project. It outlines the methodology and resources to be used for evaluating various gene predictors on the ...
- 17:33, 23 September 2007 diff hist +676 N Guidelines for Users on Submitting/Reporting Data to WormBase New page: ==Rationale== In an attempt to facilitate the deposition of information into WormBase, we have created this section on the WormBase Wiki. We want to make researchers aware of the informa...
- 17:30, 23 September 2007 diff hist +560 N WormBaseWiki:Copyrights New page: WormBase is copyright © 1999-2006 California Institute of Technology, Cold Spring Harbor Laboratory, Washington University at St. Louis, and The Wellcome Trust Sanger Institute. Permissio...
- 17:28, 23 September 2007 diff hist +1,777 N Acceptable use policy New page: Drafted: 08 January 2005 ==Data access policy== As a web-based resource, WormBase (http://www.wormbase.org) is designed for users interacting with the resource on a page-by-page basis. U...
- 17:25, 23 September 2007 diff hist +1,078 N About elegans New page: ==Laboratory, Strain, and Allele Designations== The Caenorhabditis Elegans Centre (CGC) at http://www.cbs.umn.edu/CGC/CGChomepage.htm assigns specific identifying designations to each lab...
- 17:15, 23 September 2007 diff hist +7 Main Page
- 17:14, 23 September 2007 diff hist +1,946 Main Page restored the main page. Ugh, this is not going to be fun at all. Not one bit.