Noctua model curation tracking table
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Jump to navigationJump to searchCurator | Broad Category | Pathway | Noctua Model Title | Genes | GO Term(s), IDs | Module(s) | Noctua Model URL | Model Status | Questions/Issues | To Do |
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Kimberly | Apoptosis | Apoptotic process involved in development - C. elegans NSM sister cell death | http://noctua.berkeleybop.org/editor/graph/gomodel:5745387b00001432 | Development | ||||||
Kimberly | Axon regeneration | Rac module; upstream of JNK-MAPK | C. elegans regulation of axon regeneration | http://noctua.berkeleybop.org/editor/graph/gomodel:591f58ab00000003 | Development | |||||
Kimberly | Dosage Compensation | C. elegans X chromosome dosage compensation | http://noctua.berkeleybop.org/editor/graph/gomodel:59dc728000000147 | Development | ||||||
EGF Signaling | ||||||||||
FGF Signaling | ||||||||||
Kimberly | Distal tip cell migration | Glycosylation | The directed migration of gonadal distal tip cells in Caenorhabditis elegans requires NGAT-1, a ß1,4-N-acetylgalactosaminyltransferase enzyme | http://noctua.berkeleybop.org/editor/graph/gomodel:5993df9e00000138 | Development | |||||
Kimberly | Dauer | GPCR Signaling | Two chemoreceptors mediate developmental effects of dauer pheromone in C. elegans. | http://noctua.berkeleybop.org/editor/graph/gomodel:59dc728000000454 | Development | |||||
Jae, Jane, Kimberly | Egg laying | GPCR Signaling | GRK-2 egg laying regulation JM | http://noctua.berkeleybop.org/editor/graph/gomodel:59dc728000000287 | Development | What is the correct relation to use between the amine oxidase and the serotonin receptor? | Finish up annotations for other genes in the paper | |||
Kimberly | Innate immune response | GPCR Signaling | The DAF-16/FOXO transcription factor functions as a regulator of epidermal innate immunity. | http://noctua.berkeleybop.org/editor/graph/gomodel:5993df9e00000158 | Development | |||||
Kimberly | Innate immune response | GPCR Signaling and MAPK signaling | C_elegans_defense_response_to_fungus | http://noctua.berkeleybop.org/editor/graph/gomodel:564622cc00000003 | Development | |||||
Kimberly | Heterochronic pathway | Control of C. elegans larval developmental timing - the heterochronic pathway | http://noctua.berkeleybop.org/editor/graph/gomodel:59dc728000000246 | Development | ||||||
Kimberly | Insulin Signaling | Signaling - C. elegans insulin receptor signaling | http://noctua.berkeleybop.org/editor/graph/gomodel:5667fdd400000696 | Development | ||||||
Kimberly | Germ line stem cell maintenance | Notch Signaling | C. elegans germline stem cell maintenance - Notch pathway | Notch signaling pathway (GO:0007219), positive regulation of stem cell population maintenance (GO:1902459), positive regulation of stem cell proliferation (GO:2000648) | http://noctua.berkeleybop.org/editor/graph/gomodel:5745387b00001750 | Development | ||||
Kimberly | Neuronal morphogenesis - AFD thermosensory neuron | Receptor guanylyl cyclase | Cellular Component Organization or Biogenesis - C. elegans Glial Control of Neuron Receptor Ending Shape | http://noctua.berkeleybop.org/editor/graph/gomodel:5716c41300000192 | Development | |||||
Kimberly | Olfactory behavior | Developmental programming modulates olfactory behavior in C. elegans via endogenous RNAi pathways. (PMID:27351255) | http://noctua.berkeleybop.org/editor/graph/gomodel:59237a3c00000026 | Development | ||||||
Kimberly | Thermosensory behavior | Cyclic nucleotide-gated ion channels | C. elegans CNG-3 in non-motile cilium of AFD (same reference) | cng-3 | http://noctua.berkeleybop.org/editor/graph/gomodel:5900dc7400001096 | Development | 1) How should we annotate different evidence for CC vs tissue? 2) Annotation extensions that don't use the same evidence code should not appear in the GPAD output. | |||
Kimberly | Striated muscle mitochondrial patterning | Receptor tyrosine phosphatase | The secreted MSP domain of C. elegans VAPB homolog VPR-1 patterns the adult striated muscle mitochondrial reticulum via SMN-1 | http://noctua.berkeleybop.org/editor/graph/gomodel:5970219a00000566 | Development | |||||
Kimberly | Germ line stem cell maintenance | TGFbeta Signaling | Linking the environment, DAF-7/TGFβ signaling and LAG-2/DSL ligand expression in the germline stem cell niche | http://noctua.berkeleybop.org/editor/graph/gomodel:59bee34700000074 | Development | |||||
Kimberly | DA/DB motor neuron axon outgrowth | Wnt Signaling | The ENU-3 protein family members function in the Wnt pathway parallel to UNC-6/Netrin to promote motor neuron axon outgrowth in C. elegans. | http://noctua.berkeleybop.org/editor/graph/gomodel:598826eb00000296 | Development | |||||
Chris | Q neuroblast descendant migration | Wnt Signaling | Canonical Wnt signaling in C. elegans - QL neuroblast descendant migration | canonical Wnt signaling pathway (GO:0060070), cell migration (GO:0016477), transcription from RNA polymerase II promoter (GO:0006366) | http://noctua.berkeleybop.org/editor/graph/gomodel:595a9ee700000584 | Development |