Update Matrix WS208

Check	Note	Related Compile Step
Have directories been created for given release in /u/l/w/databases?		Create Data Directories
Has a wormbase_RELEASE directory been created in /u/l/w/acedb?		Mirror and Unpack AceDB files
Is the Dev site running with the correct release number?		Mirror and Unpack AceDB files
Is the wormbase pointer linked to the newly created acedb?		Mirror and Unpack AceDB files
Is the database running and providing the correct version number?		Mirror and Unpack AceDB files
Are the correct ontology files in /u/l/w/databases?		Mirror Ontology from Sanger
Were the additional ontology files generated?		Compile Ontology Resources
Is the Multi-Ontology Search Running? URL: http://dev.wormbase.org/db/ontology/search		Compile Ontology Resources
Are the Ontology related summary pages working?		Compile Ontology Resources
Can you do a blast searches on the appropriate genomes? http://dev.wormbase.org/db/searches/blast_blat		Create Blast DBs
Can you do a blat search on the appropriate genomes? http://dev.wormbase.org/db/searches/blast_blat		Create Blat DBs
Does ePCR work? http://dev.wormbase.org/db/searches/epcr		Create ePRC DBs
Are the appropriate tracks visible on the appropriate genomes http://dev.wormbase.org/db/seq/sequence?name=AC7;class=Sequence		Load GFF DBs
Is the EST aligner working? http://dev.wormbase.org/db/seq/aligner		Load GFF DBs
Is the Gene Details Page working? http://dev.wormbase.org/db/gene/gene?name=amx-2;class=Gene;details=1;dna=B0019.1		Load GFF DBs
Are the supplementary GFF tracks available http://dev.wormbase.org/db/seq/gbrowse/c_elegans/		Load GFF DBs
Are the GBrowsers for the various species working http://dev.wormbase.org/db/seq/gbrowse/		Load GFF DBs
Are the Genetic Limit Tracks available http://dev.wormbase.org/db/seq/gbrowse/c_elegans/		Build and Load GFF Patches
Are protein motifs available on the Protein page? http://dev.wormbase.org/db/seq/protein?name=T21C12.1;class=Protein		Build and Load GFF Patches
Can you do a disease search? http://dev.wormbase.org/db/orthology/disease		Compile orthology resources
Can you list diseases for a gene? http://dev.wormbase.org/db/orthology/disease?related=WBGene00006803		Compile orthology resources
Can you list interactions? http://dev.wormbase.org/db/gene/interaction?list=WBGene00001188		Compile interaction resources
Can you list the available position matrices? http://dev.wormbase.org/db/seq/position_matrix?list=all		Compile position matrices
Can you run a CLUSTAL search? http://dev.wormbase.org/db/seq/show_mult_align		Update CLUSTAL database