2010.05 OICR WebDev Meeting
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Meeting summary
BioMart
- Abby: built WS205, migrated to new biomart machine
TODO
- Abby: might be some configuration problems with Apache
- TH: setting up as subdomain, virtual host
Development Update Pipeline
- Norie: added support for mirroring pre-prepared GFF mysql databases fom Sanger
TODO
- Continue update to WS214
- GFF MySQL code to be tested with WS215
modENCODE
- Xiaoqi: migrated current modENCODE data to production
- Emailed dev list
- Added caveat
TODO
- Need to copy over configuration stanzas to production configuration files
- GBrowse-1.70
- GBrowse-2.03
GBrowse
- Debugged various plugin issues
- SequenceDumper.pm and FastaDumper.pm issues
TODO
- add initial landmark config
- set up GBrowse 1.x @ OICR and update proxy
- XQ: Ensure feature parity between GB1/GB2
- Resolve preservation of track selection prefs problem
- TH: Karyotype hosting?
- resolve keyword searching issue (ie unc-9)
- Sanger: nucleosome data
Rearchitecture
Database Connectivity
- Xiaoqi: converting from lock based method to one checking status
- Xiaoqi: code done next week or so.
API
- Standardized data structure
- Expanded class coverage
- Norie working on additional classes
TODO
- TH: prioritize order in which classes/pages should be converted.
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QA/QC meetings
Visit goals
- Benchmarks
- Tests
- Documentation
- Sanger Databases
- Issue Tracker issues
- OICR aceserver